Strain Fitness in Escherichia coli BW25113 around b4069

Experiment: Ying_OrganicAcid7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 3
4,282,531	+	actP	b4067	0.76	-0.2
4,282,706	-	actP	b4067	0.87	-0.9
4,282,718	-	actP	b4067	0.87	-0.3
4,282,718	-	actP	b4067	0.87	-0.0
4,282,738	-	actP	b4067	0.89	+0.4
4,282,738	-	actP	b4067	0.89	+0.5
4,282,740	-	actP	b4067	0.89	-0.1
4,282,842	+				-0.2
4,282,864	-				+0.4
4,282,873	-				-1.1
4,282,909	+				+0.5
4,282,938	-				-0.4
4,282,990	+	yjcH	b4068	0.22	-0.2
4,283,005	+	yjcH	b4068	0.26	-0.6
4,283,013	-	yjcH	b4068	0.29	+0.6
4,283,013	-	yjcH	b4068	0.29	-1.1
4,283,013	-	yjcH	b4068	0.29	-0.8
4,283,050	+	yjcH	b4068	0.41	-0.0
4,283,121	-	yjcH	b4068	0.63	-0.2
4,283,212	-				-0.2
4,283,212	-				-1.3
4,283,218	+				-0.1
4,283,224	-				-0.1
4,283,224	-				+0.2
4,283,291	-				+0.2
4,283,315	-				-0.2
4,283,315	-				-0.4
4,283,395	+				-0.7
4,283,395	+				-0.5
4,283,423	+				-0.2
4,283,423	+				-0.6
4,283,514	+				-0.3
4,283,514	+				-0.2
4,283,595	-				-0.5
4,283,678	-	acs	b4069	0.12	-0.4
4,283,678	-	acs	b4069	0.12	-0.5
4,283,712	+	acs	b4069	0.14	-0.6
4,283,749	-	acs	b4069	0.16	-0.7
4,283,808	+	acs	b4069	0.19	-0.4
4,283,855	+	acs	b4069	0.21	-1.3
4,283,855	+	acs	b4069	0.21	+0.2
4,283,865	+	acs	b4069	0.22	-0.1
4,283,956	+	acs	b4069	0.27	-1.1
4,283,974	-	acs	b4069	0.27	-0.2
4,283,981	-	acs	b4069	0.28	-0.2
4,283,981	-	acs	b4069	0.28	-0.2
4,283,983	+	acs	b4069	0.28	-0.4
4,284,007	-	acs	b4069	0.29	-0.0
4,284,032	-	acs	b4069	0.30	+0.2
4,284,032	-	acs	b4069	0.30	-0.5
4,284,215	+	acs	b4069	0.40	-0.3
4,284,215	+	acs	b4069	0.40	-0.8
4,284,229	-	acs	b4069	0.40	-0.6
4,284,233	+	acs	b4069	0.41	-0.5
4,284,255	-	acs	b4069	0.42	-1.3
4,284,398	-	acs	b4069	0.49	-0.2
4,284,446	-	acs	b4069	0.52	-0.3
4,284,449	-	acs	b4069	0.52	-0.8
4,284,454	-	acs	b4069	0.52	+0.1
4,284,486	+	acs	b4069	0.54	-0.6
4,284,521	-	acs	b4069	0.55	-1.0
4,284,521	-	acs	b4069	0.55	-0.2
4,284,541	+	acs	b4069	0.56	-1.0
4,284,587	-	acs	b4069	0.59	-0.6
4,284,675	-	acs	b4069	0.63	-0.2
4,284,677	+				-0.4
4,284,690	-	acs	b4069	0.64	+0.2
4,284,690	-	acs	b4069	0.64	-1.0
4,284,792	-	acs	b4069	0.69	-1.6
4,284,811	-	acs	b4069	0.70	-1.9
4,284,811	-	acs	b4069	0.70	+0.4
4,284,841	+	acs	b4069	0.72	-0.2
4,284,983	-	acs	b4069	0.79	-0.9
4,285,188	+	acs	b4069	0.89	-0.5
4,285,199	+				+0.0
4,285,326	-				-1.1
4,285,326	-				-0.1
4,285,406	+				-0.7
4,285,695	+				-0.4
4,285,711	+				+0.0
4,285,896	+				-0.1
4,285,948	+	nrfA	b4070	0.11	-0.6
4,285,948	+	nrfA	b4070	0.11	+0.2
4,285,967	+	nrfA	b4070	0.13	-0.0
4,286,025	-	nrfA	b4070	0.17	-0.2
4,286,025	-	nrfA	b4070	0.17	-0.6
4,286,035	+	nrfA	b4070	0.17	-0.2
4,286,035	-	nrfA	b4070	0.17	-0.6
4,286,089	+	nrfA	b4070	0.21	+0.3
4,286,089	+	nrfA	b4070	0.21	+0.3
4,286,107	-	nrfA	b4070	0.22	+0.1
4,286,107	-	nrfA	b4070	0.22	+0.2
4,286,109	-	nrfA	b4070	0.22	-0.4
4,286,135	+	nrfA	b4070	0.24	-0.2
4,286,135	+	nrfA	b4070	0.24	+0.4
4,286,168	-	nrfA	b4070	0.27	-0.2
4,286,168	-	nrfA	b4070	0.27	+0.4
4,286,179	-	nrfA	b4070	0.27	-0.3
4,286,340	-	nrfA	b4070	0.38	+0.7