Strain Fitness in Escherichia coli BW25113 around b3008

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
3,149,377	+	exbB	b3006	0.14	-0.3
3,149,377	+	exbB	b3006	0.14	+0.3
3,149,380	+	exbB	b3006	0.15	-0.7
3,149,396	-	exbB	b3006	0.17	+0.4
3,149,448	-	exbB	b3006	0.24	-0.0
3,149,501	+	exbB	b3006	0.31	-0.9
3,149,508	+	exbB	b3006	0.32	-0.0
3,149,543	-	exbB	b3006	0.37	+0.1
3,149,553	-	exbB	b3006	0.38	+0.3
3,149,554	+	exbB	b3006	0.38	+0.3
3,149,564	+	exbB	b3006	0.40	-1.1
3,149,659	+	exbB	b3006	0.53	-0.0
3,149,682	-	exbB	b3006	0.56	-0.1
3,149,682	-	exbB	b3006	0.56	-0.4
3,149,690	-	exbB	b3006	0.57	+0.3
3,149,707	+	exbB	b3006	0.59	-0.3
3,149,710	-	exbB	b3006	0.60	+0.1
3,149,718	+	exbB	b3006	0.61	-1.5
3,149,803	-	exbB	b3006	0.72	-0.7
3,149,803	-	exbB	b3006	0.72	-0.3
3,149,866	+	exbB	b3006	0.81	+0.5
3,149,956	+				+0.5
3,149,956	+				+0.7
3,149,956	+				-0.1
3,149,983	+				-0.1
3,150,016	-				-0.0
3,150,257	-				-0.6
3,150,288	-				-4.1
3,150,292	+				-5.9
3,150,300	-				-3.6
3,150,300	-				-3.3
3,150,337	-				-4.6
3,150,378	-	metC	b3008	0.10	-5.1
3,150,421	+	metC	b3008	0.14	-3.5
3,150,421	+	metC	b3008	0.14	-4.2
3,150,514	-	metC	b3008	0.22	-4.5
3,150,575	+	metC	b3008	0.27	-4.9
3,150,577	-	metC	b3008	0.27	-4.9
3,150,583	-	metC	b3008	0.27	-4.1
3,150,640	-	metC	b3008	0.32	-5.1
3,150,654	+	metC	b3008	0.33	-4.4
3,150,669	+	metC	b3008	0.35	-4.6
3,150,706	-	metC	b3008	0.38	-6.1
3,150,791	-	metC	b3008	0.45	-4.9
3,150,820	+	metC	b3008	0.47	-5.1
3,150,820	+	metC	b3008	0.47	-4.4
3,150,912	+	metC	b3008	0.55	-5.1
3,150,914	+	metC	b3008	0.55	-2.8
3,150,915	+	metC	b3008	0.55	-2.4
3,150,932	-	metC	b3008	0.57	-3.2
3,151,015	+				-1.9
3,151,015	+	metC	b3008	0.64	-2.8
3,151,028	+	metC	b3008	0.65	-6.0
3,151,038	-	metC	b3008	0.66	-3.9
3,151,038	-	metC	b3008	0.66	-4.4
3,151,074	-	metC	b3008	0.69	-3.8
3,151,074	-	metC	b3008	0.69	-5.1
3,151,120	+	metC	b3008	0.73	-5.6
3,151,125	+	metC	b3008	0.73	-1.9
3,151,138	-	metC	b3008	0.74	-7.0
3,151,216	+	metC	b3008	0.81	-4.1
3,151,216	+	metC	b3008	0.81	-4.4
3,151,237	+	metC	b3008	0.82	-4.3
3,151,274	-	metC	b3008	0.86	-5.0
3,151,376	+				-4.4
3,151,655	-	yghB	b3009	0.11	+0.6
3,151,859	+	yghB	b3009	0.42	-0.0
3,151,859	+	yghB	b3009	0.42	-1.0
3,151,867	-	yghB	b3009	0.43	-0.4
3,151,889	+	yghB	b3009	0.46	+0.4
3,151,889	+	yghB	b3009	0.46	+0.3
3,152,046	+	yghB	b3009	0.70	+0.6
3,152,046	+	yghB	b3009	0.70	+0.6
3,152,076	+	yghB	b3009	0.74	+0.0
3,152,084	-	yghB	b3009	0.76	+0.5
3,152,101	-	yghB	b3009	0.78	-0.5
3,152,101	-	yghB	b3009	0.78	+1.0
3,152,130	+	yghB	b3009	0.83	-0.2
3,152,133	+	yghB	b3009	0.83	-0.0
3,152,152	-	yghB	b3009	0.86	+0.3
3,152,153	-	yghB	b3009	0.86	+0.3
3,152,186	+				+0.2
3,152,256	+				+0.3
3,152,256	+				+0.3
3,152,280	+				-0.4
3,152,290	+				+0.5
3,152,290	+				+1.4
3,152,372	+				-0.1
3,152,377	+				+1.1