Strain Fitness in Escherichia coli BW25113 around b3110

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,253,775	+	yhaM	b4470	0.31	+0.1
3,253,775	+	yhaM	b4470	0.31	-0.1
3,253,812	-	yhaM	b4470	0.34	+0.2
3,253,812	-	yhaM	b4470	0.34	-0.3
3,253,926	-	yhaM	b4470	0.43	-0.7
3,253,932	-	yhaM	b4470	0.43	-1.9
3,253,954	-	yhaM	b4470	0.45	+0.1
3,253,954	-	yhaM	b4470	0.45	-0.1
3,254,190	-	yhaM	b4470	0.63	-0.4
3,254,199	+	yhaM	b4470	0.64	+0.4
3,254,227	-	yhaM	b4470	0.66	-0.2
3,254,246	-	yhaM	b4470	0.67	-0.1
3,254,348	+	yhaM	b4470	0.75	-0.3
3,254,349	-	yhaM	b4470	0.75	-0.2
3,254,378	-	yhaM	b4470	0.77	-1.0
3,254,383	-	yhaM	b4470	0.78	+0.5
3,254,573	-				+0.1
3,254,581	+				+0.1
3,254,581	+				+0.5
3,254,586	+				+0.0
3,254,682	-				+0.7
3,254,824	+				-1.3
3,254,827	+				-0.5
3,254,854	+	yhaO	b3110	0.11	-0.1
3,254,876	+	yhaO	b3110	0.13	+0.0
3,254,876	+	yhaO	b3110	0.13	+0.1
3,254,974	-	yhaO	b3110	0.20	+0.5
3,255,051	-	yhaO	b3110	0.26	+0.2
3,255,074	-	yhaO	b3110	0.28	-1.3
3,255,074	-	yhaO	b3110	0.28	+0.1
3,255,185	+	yhaO	b3110	0.36	-0.5
3,255,185	+	yhaO	b3110	0.36	+0.3
3,255,257	+	yhaO	b3110	0.42	+0.2
3,255,350	+	yhaO	b3110	0.49	-0.4
3,255,356	-	yhaO	b3110	0.49	-1.4
3,255,418	-	yhaO	b3110	0.54	-0.8
3,255,494	+	yhaO	b3110	0.60	-0.1
3,255,549	+	yhaO	b3110	0.64	-0.4
3,255,549	+	yhaO	b3110	0.64	+0.4
3,255,549	+	yhaO	b3110	0.64	+0.1
3,255,549	+	yhaO	b3110	0.64	-0.4
3,255,557	+	yhaO	b3110	0.64	+0.3
3,255,557	+	yhaO	b3110	0.64	-0.5
3,255,557	-	yhaO	b3110	0.64	-0.6
3,255,557	-	yhaO	b3110	0.64	+0.8
3,255,557	-	yhaO	b3110	0.64	+0.3
3,255,590	-	yhaO	b3110	0.67	+0.1
3,255,599	+	yhaO	b3110	0.67	-0.4
3,255,611	-	yhaO	b3110	0.68	+0.2
3,255,611	-	yhaO	b3110	0.68	-0.6
3,255,617	-	yhaO	b3110	0.69	+0.1
3,255,618	-	yhaO	b3110	0.69	+0.1
3,255,622	+	yhaO	b3110	0.69	+0.0
3,255,683	+	yhaO	b3110	0.74	-0.0
3,255,696	-	yhaO	b3110	0.75	-0.1
3,255,698	+	yhaO	b3110	0.75	-0.2
3,255,698	+	yhaO	b3110	0.75	+0.8
3,255,790	+	yhaO	b3110	0.82	-1.4
3,255,790	+	yhaO	b3110	0.82	-1.2
3,255,823	-	yhaO	b3110	0.84	-0.2
3,255,858	-	yhaO	b3110	0.87	-0.4
3,255,910	-				-0.4
3,255,929	-				-0.5
3,255,929	-				-0.1
3,255,929	-				+0.4
3,255,929	-				+0.4
3,255,958	+				+0.0
3,255,959	+				-0.9
3,255,969	+				-0.0
3,255,969	+				-0.3
3,255,977	-				+0.1
3,255,977	-				+0.2
3,256,098	+				+0.3
3,256,098	+				-0.5
3,256,104	-				-0.1
3,256,328	-				+0.0
3,256,365	+				+0.3
3,256,465	-	tdcG	b4471	0.12	-0.5
3,256,510	-	tdcG	b4471	0.15	+0.1
3,256,510	-	tdcG	b4471	0.15	-0.6
3,256,544	-	tdcG	b4471	0.17	+0.8
3,256,544	-	tdcG	b4471	0.17	+0.7
3,256,545	-	tdcG	b4471	0.17	-0.2
3,256,569	+	tdcG	b4471	0.19	+0.1
3,256,614	-	tdcG	b4471	0.22	+0.8
3,256,632	-	tdcG	b4471	0.24	+0.3
3,256,708	-	tdcG	b4471	0.29	+0.3
3,256,768	+	tdcG	b4471	0.34	-0.2
3,256,776	-	tdcG	b4471	0.34	-0.2
3,256,811	+	tdcG	b4471	0.37	-0.7
3,256,832	-	tdcG	b4471	0.38	+0.3
3,256,832	-	tdcG	b4471	0.38	-0.1
3,257,003	-	tdcG	b4471	0.51	+0.7
3,257,004	-	tdcG	b4471	0.51	-0.1