Strain Fitness in Escherichia coli BW25113 around b4039

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
4,249,899	-				+2.8
4,250,045	-				-0.2
4,250,071	-				+0.1
4,250,071	-				+1.5
4,250,074	-				-0.0
4,250,085	-				+0.5
4,250,086	+				+1.2
4,250,088	+				+0.0
4,250,088	+				+0.0
4,250,088	+				+1.2
4,250,089	+				-1.3
4,250,094	-				+0.7
4,250,094	-				+1.0
4,250,095	-				+2.1
4,250,095	-				+1.5
4,250,095	-				-1.5
4,250,096	-				+0.7
4,250,096	-				+0.5
4,250,096	-				+0.0
4,250,096	-				+0.4
4,250,096	-				+0.3
4,250,096	-				-1.6
4,250,096	-				+1.4
4,250,096	-				-0.5
4,250,097	-				-0.6
4,250,097	-				+1.3
4,250,101	+				-0.4
4,250,101	+				+1.0
4,250,101	+				+0.3
4,250,104	-				+1.3
4,250,109	-				+0.3
4,250,113	+				-1.1
4,250,113	+				+0.6
4,250,118	-				-0.8
4,250,119	-				+0.8
4,250,119	-				+0.2
4,250,121	+				+1.3
4,250,121	+				+1.2
4,250,205	-				+0.2
4,250,232	+				+0.1
4,250,257	-				-0.4
4,250,257	-				-0.3
4,250,310	+				-0.3
4,250,342	+				+1.1
4,250,345	-				+0.5
4,250,345	-				+0.6
4,250,347	+				+0.3
4,250,352	-				-0.3
4,250,352	-				+0.6
4,250,356	+				-0.7
4,250,358	-				-0.1
4,250,358	-				-0.0
4,250,359	-				+0.2
4,250,365	-				-0.0
4,250,384	-				-0.5
4,250,384	-				+0.7
4,250,386	-				-0.9
4,250,389	-				+0.7
4,250,523	-				-0.9
4,250,539	-				-2.0
4,250,539	-				-0.5
4,250,580	-	ubiC	b4039	0.10	-2.9
4,250,593	+	ubiC	b4039	0.13	-1.4
4,250,786	+	ubiC	b4039	0.52	-0.1
4,250,787	-	ubiC	b4039	0.52	-0.9
4,250,831	-	ubiC	b4039	0.61	-2.0
4,250,870	+	ubiC	b4039	0.68	-0.6
4,250,885	+	ubiC	b4039	0.71	-0.8
4,250,890	+	ubiC	b4039	0.72	-1.0
4,250,920	+	ubiC	b4039	0.79	-1.3
4,250,925	+	ubiC	b4039	0.80	-1.8
4,250,925	+	ubiC	b4039	0.80	-1.2
4,250,963	+	ubiC	b4039	0.87	-0.9
4,250,992	-				-1.3
4,251,913	+				+1.4
4,251,953	-				-0.1
4,251,972	+				+0.5
4,251,980	-				-1.0
4,251,980	-				+0.5
4,251,985	-				+0.1
4,251,985	-				+0.3