Strain Fitness in Escherichia coli BW25113 around b3645

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,814,783	-				+2.8
3,814,829	+	yicC	b3644	0.15	-1.3
3,814,829	+	yicC	b3644	0.15	+1.2
3,814,859	+	yicC	b3644	0.19	+1.3
3,814,867	-	yicC	b3644	0.19	+2.4
3,814,886	+	yicC	b3644	0.22	-0.1
3,814,904	-	yicC	b3644	0.24	+1.5
3,815,021	+	yicC	b3644	0.37	+0.5
3,815,031	-	yicC	b3644	0.38	+1.3
3,815,031	-	yicC	b3644	0.38	+2.0
3,815,040	+	yicC	b3644	0.39	+0.4
3,815,172	-	yicC	b3644	0.55	+0.7
3,815,172	-	yicC	b3644	0.55	-0.1
3,815,189	+	yicC	b3644	0.57	+0.4
3,815,355	-	yicC	b3644	0.76	+1.4
3,815,392	-	yicC	b3644	0.80	+1.0
3,815,475	-	yicC	b3644	0.90	+0.3
3,815,475	-	yicC	b3644	0.90	+1.3
3,815,483	-				+0.8
3,815,602	+				+0.2
3,815,606	+				-0.3
3,815,616	-				-0.3
3,815,755	+				+0.1
3,815,772	-				-0.0
3,815,774	+				+0.6
3,815,835	+				+0.8
3,815,835	+				+0.2
3,815,848	-				-0.4
3,815,855	-				-0.4
3,815,855	-				-0.9
3,815,861	-				-0.4
3,815,870	+	dinD	b3645	0.11	-0.8
3,815,878	-	dinD	b3645	0.12	-0.0
3,815,898	+	dinD	b3645	0.14	-0.0
3,815,898	-	dinD	b3645	0.14	+0.2
3,815,906	+	dinD	b3645	0.15	-0.1
3,815,914	-	dinD	b3645	0.16	-0.9
3,815,927	+	dinD	b3645	0.17	-0.3
3,815,930	+	dinD	b3645	0.18	+0.2
3,815,940	+	dinD	b3645	0.19	-1.1
3,815,954	+	dinD	b3645	0.21	-0.0
3,816,009	-	dinD	b3645	0.27	-0.3
3,816,009	-	dinD	b3645	0.27	+0.1
3,816,012	+	dinD	b3645	0.28	+0.8
3,816,116	-	dinD	b3645	0.40	-0.1
3,816,116	-	dinD	b3645	0.40	-0.9
3,816,116	-	dinD	b3645	0.40	+0.4
3,816,137	+	dinD	b3645	0.43	+0.2
3,816,170	+	dinD	b3645	0.47	+0.3
3,816,170	+	dinD	b3645	0.47	+0.7
3,816,233	+	dinD	b3645	0.55	-0.3
3,816,241	-	dinD	b3645	0.56	+0.2
3,816,249	-	dinD	b3645	0.56	-0.7
3,816,253	+	dinD	b3645	0.57	-0.2
3,816,255	+	dinD	b3645	0.57	-0.7
3,816,258	+	dinD	b3645	0.58	-0.4
3,816,291	+	dinD	b3645	0.62	+0.1
3,816,309	-	dinD	b3645	0.64	+0.2
3,816,309	-	dinD	b3645	0.64	+0.8
3,816,317	-	dinD	b3645	0.65	-0.6
3,816,381	+	dinD	b3645	0.72	-0.9
3,816,386	-	dinD	b3645	0.73	-0.1
3,816,386	-	dinD	b3645	0.73	-0.1
3,816,389	-	dinD	b3645	0.73	-0.2
3,816,389	-	dinD	b3645	0.73	-1.2
3,816,469	+	dinD	b3645	0.83	-0.5
3,816,486	-	dinD	b3645	0.85	+0.2
3,816,495	+	dinD	b3645	0.86	-0.4
3,816,503	-	dinD	b3645	0.87	-0.8
3,816,503	-	dinD	b3645	0.87	-1.6
3,816,507	+	dinD	b3645	0.88	-0.3
3,816,507	+	dinD	b3645	0.88	+0.2
3,816,531	+				+0.0
3,816,561	-				+0.0
3,816,629	+				-0.1
3,816,632	+				+0.6
3,816,666	+				-0.3
3,816,670	+				-0.6
3,816,866	-				-0.1
3,816,908	-				-1.1
3,816,908	-				-1.5
3,816,908	-				-0.2
3,816,908	-				-0.0
3,816,934	-				+0.5
3,816,938	+				+0.6
3,816,938	+				-0.5
3,816,946	-				-0.0
3,816,947	-				+0.1
3,816,947	-				+0.0
3,816,961	+	yicG	b3646	0.10	-0.2
3,816,966	+	yicG	b3646	0.11	+0.5
3,816,966	+	yicG	b3646	0.11	-0.3
3,816,986	-	yicG	b3646	0.14	-0.4
3,816,986	-	yicG	b3646	0.14	-0.2
3,817,027	+	yicG	b3646	0.21	+0.1
3,817,027	+	yicG	b3646	0.21	+0.6
3,817,051	+	yicG	b3646	0.25	-1.0
3,817,052	-	yicG	b3646	0.25	-0.2
3,817,057	-	yicG	b3646	0.26	-0.9
3,817,087	+	yicG	b3646	0.31	-0.2
3,817,087	+	yicG	b3646	0.31	+0.1
3,817,146	+	yicG	b3646	0.40	+2.6
3,817,149	-	yicG	b3646	0.41	+0.5
3,817,149	-	yicG	b3646	0.41	-0.2
3,817,207	+	yicG	b3646	0.50	+0.5
3,817,215	-	yicG	b3646	0.51	-1.0
3,817,231	-	yicG	b3646	0.54	+0.0
3,817,285	-	yicG	b3646	0.63	-0.8
3,817,285	-	yicG	b3646	0.63	-0.8
3,817,328	+	yicG	b3646	0.70	+0.2
3,817,328	+	yicG	b3646	0.70	-0.2
3,817,335	+	yicG	b3646	0.71	-0.8
3,817,345	-	yicG	b3646	0.72	+0.8
3,817,371	-	yicG	b3646	0.77	+0.0
3,817,376	-	yicG	b3646	0.78	+0.2
3,817,376	-	yicG	b3646	0.78	+0.2
3,817,378	-	yicG	b3646	0.78	-0.3
3,817,391	+	yicG	b3646	0.80	-1.2
3,817,401	+	yicG	b3646	0.82	+1.2
3,817,401	+	yicG	b3646	0.82	+0.3
3,817,433	-	yicG	b3646	0.87	+0.2
3,817,485	+				-0.4
3,817,506	-				-0.1
3,817,607	+				+0.2