Strain Fitness in Escherichia coli BW25113 around b3619

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,791,016	-	htrL	b3618	0.19	+0.1
3,791,016	-	htrL	b3618	0.19	+0.4
3,791,156	-	htrL	b3618	0.36	-0.6
3,791,156	-	htrL	b3618	0.36	-0.4
3,791,164	-	htrL	b3618	0.37	-0.1
3,791,183	-	htrL	b3618	0.39	+1.4
3,791,191	-	htrL	b3618	0.40	-1.1
3,791,191	-	htrL	b3618	0.40	-1.4
3,791,193	-	htrL	b3618	0.40	+0.6
3,791,203	-	htrL	b3618	0.41	-0.2
3,791,246	-	htrL	b3618	0.46	+0.3
3,791,247	-	htrL	b3618	0.46	+2.9
3,791,270	-	htrL	b3618	0.49	+0.6
3,791,271	-	htrL	b3618	0.49	-0.5
3,791,304	-	htrL	b3618	0.53	+1.3
3,791,304	-	htrL	b3618	0.53	+2.9
3,791,304	-	htrL	b3618	0.53	+0.9
3,791,316	-	htrL	b3618	0.54	+2.9
3,791,316	-	htrL	b3618	0.54	+1.3
3,791,347	-	htrL	b3618	0.58	+2.4
3,791,359	-	htrL	b3618	0.59	+0.6
3,791,360	-	htrL	b3618	0.60	+2.9
3,791,361	-	htrL	b3618	0.60	-0.0
3,791,361	-	htrL	b3618	0.60	+0.9
3,791,361	-	htrL	b3618	0.60	+0.1
3,791,361	-	htrL	b3618	0.60	+0.6
3,791,361	-	htrL	b3618	0.60	+1.9
3,791,419	-	htrL	b3618	0.66	+0.6
3,791,571	-	htrL	b3618	0.84	+1.9
3,791,571	-	htrL	b3618	0.84	+2.9
3,791,693	-				+0.9
3,791,774	-				-0.6
3,791,774	-				+0.2
3,791,823	+				-1.2
3,791,841	-				+0.6
3,791,851	-				-0.9
3,791,851	-				+0.3
3,791,856	+				-0.8
3,791,857	+				-0.6
3,791,857	+				-2.0
3,791,859	+				+0.3
3,791,859	+				+0.9
3,791,864	+				-0.2
3,791,864	-				-0.8
3,791,864	-				-0.6
3,791,864	-				+0.4
3,791,877	-				-0.5
3,791,877	-				-0.6
3,791,877	-				-0.3
3,791,877	-				-0.3
3,791,896	-				+0.4
3,791,896	-				+0.1
3,791,898	-				+0.4
3,791,904	-				+0.2
3,791,913	+				+1.5
3,791,913	+				+0.6
3,791,914	-				-0.8
3,791,914	-				-1.4
3,791,919	-				-0.2
3,791,919	-				+1.3
3,791,919	-				-0.9
3,791,919	-				-0.1
3,791,919	-				+1.0
3,791,921	-				-0.2
3,791,922	-				+0.1
3,791,924	-				-0.8
3,791,924	-				-0.5
3,791,928	+				-0.2
3,791,931	-				+0.3
3,791,932	-				+0.1
3,791,952	-				-0.9
3,791,955	-				-1.0
3,791,959	-				-1.0
3,791,967	+				-2.4
3,791,974	+				-3.5
3,792,061	-				-2.1
3,792,061	-				-1.1
3,792,113	-	rfaD	b3619	0.11	+0.2
3,792,113	-	rfaD	b3619	0.11	-0.9
3,792,152	-	rfaD	b3619	0.15	-1.2
3,792,270	+	rfaD	b3619	0.28	-3.4
3,792,370	+	rfaD	b3619	0.39	-2.2
3,792,380	+	rfaD	b3619	0.40	-1.0
3,792,380	+	rfaD	b3619	0.40	-0.2
3,792,389	+	rfaD	b3619	0.41	-0.3
3,792,397	-	rfaD	b3619	0.41	+0.1
3,792,462	+	rfaD	b3619	0.48	-0.6
3,792,464	+	rfaD	b3619	0.49	-0.6
3,792,479	+	rfaD	b3619	0.50	-2.4
3,792,546	-	rfaD	b3619	0.57	-1.3
3,792,588	-	rfaD	b3619	0.62	-1.8
3,792,588	-	rfaD	b3619	0.62	-0.1
3,792,661	+	rfaD	b3619	0.70	+0.7
3,792,662	-	rfaD	b3619	0.70	-1.7
3,792,670	+	rfaD	b3619	0.71	-0.2
3,792,683	-	rfaD	b3619	0.72	-1.0
3,792,705	+	rfaD	b3619	0.74	-2.8
3,792,713	-	rfaD	b3619	0.75	-0.3
3,792,714	-	rfaD	b3619	0.75	-2.0
3,792,726	+	rfaD	b3619	0.77	-1.8
3,792,730	-	rfaD	b3619	0.77	-0.7
3,792,730	-	rfaD	b3619	0.77	-0.1
3,792,736	+	rfaD	b3619	0.78	-1.3
3,792,755	-	rfaD	b3619	0.80	-0.4
3,792,771	+	rfaD	b3619	0.82	-0.2
3,792,907	+				-1.7
3,792,915	-				-2.1
3,792,915	-				-1.4
3,792,946	-				+0.1
3,792,975	+				-0.0
3,792,975	+				-1.1
3,792,975	+				+0.1
3,793,011	+				+0.1
3,793,021	+				+1.9
3,793,021	+				-1.0
3,793,021	+				-1.4
3,793,034	+				-1.4
3,793,124	-	rfaF	b3620	0.16	-0.6
3,793,169	+	rfaF	b3620	0.21	-1.2
3,793,234	-	rfaF	b3620	0.27	-2.1
3,793,259	-	rfaF	b3620	0.29	-0.9
3,793,305	-	rfaF	b3620	0.34	-0.7
3,793,307	+	rfaF	b3620	0.34	-2.0
3,793,307	+	rfaF	b3620	0.34	+1.9
3,793,307	+	rfaF	b3620	0.34	+0.3
3,793,307	-	rfaF	b3620	0.34	+0.9
3,793,311	+	rfaF	b3620	0.34	+0.5
3,793,328	-	rfaF	b3620	0.36	-0.2
3,793,350	+				+1.0
3,793,353	+	rfaF	b3620	0.38	-1.1
3,793,358	-	rfaF	b3620	0.39	-1.7
3,793,358	-	rfaF	b3620	0.39	+0.2
3,793,393	+	rfaF	b3620	0.42	-0.5
3,793,393	+	rfaF	b3620	0.42	-0.7
3,793,393	+	rfaF	b3620	0.42	+0.1
3,793,513	+	rfaF	b3620	0.54	-0.5
3,793,543	+	rfaF	b3620	0.56	+1.7
3,793,546	+	rfaF	b3620	0.57	-1.5
3,793,554	-	rfaF	b3620	0.57	+0.2
3,793,554	-	rfaF	b3620	0.57	-0.4
3,793,589	+	rfaF	b3620	0.61	-0.1
3,793,589	+	rfaF	b3620	0.61	+1.2
3,793,595	-	rfaF	b3620	0.61	+1.0
3,793,600	+	rfaF	b3620	0.62	+0.3
3,793,663	+	rfaF	b3620	0.68	+0.6
3,793,725	-	rfaF	b3620	0.74	-0.6
3,793,725	-	rfaF	b3620	0.74	-1.4
3,793,734	-	rfaF	b3620	0.75	-1.5
3,793,734	-	rfaF	b3620	0.75	-0.7
3,793,765	-	rfaF	b3620	0.78	-1.5
3,793,775	+	rfaF	b3620	0.79	-1.9
3,793,775	+	rfaF	b3620	0.79	+1.5
3,793,813	+	rfaF	b3620	0.82	-0.6
3,793,813	+				-0.9
3,793,821	-	rfaF	b3620	0.83	-0.2
3,793,857	-	rfaF	b3620	0.86	+0.0
3,793,857	-	rfaF	b3620	0.86	-0.4
3,793,916	+				-0.1
3,793,921	-				+1.7
3,793,921	-				+1.6
3,793,926	-				+0.6