Strain Fitness in Escherichia coli BW25113 around b3613

Experiment: Ying_AminoAcid20 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep C; time point 3
3,783,929	-				+1.9
3,783,929	-	gpmI	b3612	0.42	-2.0
3,783,948	+	gpmI	b3612	0.43	+0.0
3,783,966	-	gpmI	b3612	0.44	-0.5
3,783,966	-	gpmI	b3612	0.44	+0.6
3,784,005	-	gpmI	b3612	0.47	-0.3
3,784,005	-	gpmI	b3612	0.47	+1.0
3,784,005	-	gpmI	b3612	0.47	+0.5
3,784,009	+	gpmI	b3612	0.47	+0.1
3,784,216	+	gpmI	b3612	0.60	-1.5
3,784,229	-	gpmI	b3612	0.61	+0.2
3,784,296	-	gpmI	b3612	0.66	-0.1
3,784,322	+	gpmI	b3612	0.67	+0.5
3,784,322	+	gpmI	b3612	0.67	-0.2
3,784,330	-	gpmI	b3612	0.68	-0.4
3,784,330	-	gpmI	b3612	0.68	-0.2
3,784,330	-	gpmI	b3612	0.68	-0.3
3,784,342	+	gpmI	b3612	0.69	-0.1
3,784,409	+	gpmI	b3612	0.73	+0.1
3,784,409	+	gpmI	b3612	0.73	-0.5
3,784,409	+	gpmI	b3612	0.73	-0.6
3,784,409	+	gpmI	b3612	0.73	+0.4
3,784,409	+	gpmI	b3612	0.73	+0.2
3,784,414	-	gpmI	b3612	0.73	+0.1
3,784,419	-	gpmI	b3612	0.74	+0.6
3,784,419	-	gpmI	b3612	0.74	-0.5
3,784,424	-	gpmI	b3612	0.74	-0.7
3,784,476	-	gpmI	b3612	0.77	+0.0
3,784,476	-	gpmI	b3612	0.77	+0.0
3,784,493	+	gpmI	b3612	0.78	-0.1
3,784,493	+	gpmI	b3612	0.78	+0.6
3,784,515	-	gpmI	b3612	0.80	-0.2
3,784,515	-	gpmI	b3612	0.80	+0.4
3,784,561	-	gpmI	b3612	0.83	-0.5
3,784,594	+	gpmI	b3612	0.85	-0.1
3,784,599	+	gpmI	b3612	0.85	+0.2
3,784,599	+	gpmI	b3612	0.85	+0.6
3,784,612	+	gpmI	b3612	0.86	-0.2
3,784,622	+	gpmI	b3612	0.87	+0.2
3,784,622	-	gpmI	b3612	0.87	-1.2
3,784,622	-	gpmI	b3612	0.87	-1.4
3,784,651	+	gpmI	b3612	0.89	+0.9
3,784,651	+	gpmI	b3612	0.89	-0.1
3,784,651	+	gpmI	b3612	0.89	-0.4
3,784,651	+	gpmI	b3612	0.89	-0.2
3,784,656	+	gpmI	b3612	0.89	+0.5
3,784,664	-	gpmI	b3612	0.89	+1.3
3,784,669	+	gpmI	b3612	0.90	+0.1
3,784,669	+	gpmI	b3612	0.90	-0.0
3,784,700	-				-0.9
3,784,723	+				+0.8
3,784,773	+				-0.1
3,784,859	+				+0.8
3,784,905	+				+0.0
3,784,905	+				-0.4
3,784,906	+				+0.2
3,785,003	+	yibP	b3613	0.11	-2.2
3,785,011	-	yibP	b3613	0.12	-2.9
3,785,111	-	yibP	b3613	0.20	-1.1
3,785,203	-	yibP	b3613	0.27	+0.2
3,785,215	-	yibP	b3613	0.28	+0.3
3,785,239	-	yibP	b3613	0.30	-1.6
3,785,260	-	yibP	b3613	0.32	-0.4
3,785,263	-	yibP	b3613	0.32	-0.7
3,785,274	-	yibP	b3613	0.33	-1.6
3,785,363	-	yibP	b3613	0.40	-1.2
3,785,363	-	yibP	b3613	0.40	-1.5
3,785,366	+	yibP	b3613	0.40	-1.1
3,785,390	+	yibP	b3613	0.42	-0.4
3,785,432	+	yibP	b3613	0.45	-0.6
3,785,440	-	yibP	b3613	0.46	+1.2
3,785,440	-	yibP	b3613	0.46	-0.8
3,785,526	-	yibP	b3613	0.53	-0.7
3,785,563	+	yibP	b3613	0.56	-0.3
3,785,623	+	yibP	b3613	0.60	-0.9
3,785,639	-	yibP	b3613	0.62	-0.2
3,785,675	-	yibP	b3613	0.65	+0.6
3,785,681	+	yibP	b3613	0.65	-0.7
3,785,681	+	yibP	b3613	0.65	-0.1
3,785,690	-	yibP	b3613	0.66	-1.0
3,785,720	-	yibP	b3613	0.68	+1.9
3,785,748	-	yibP	b3613	0.70	-1.1
3,785,776	+	yibP	b3613	0.73	+0.9
3,785,807	-	yibP	b3613	0.75	-1.9
3,785,807	-	yibP	b3613	0.75	-1.9
3,785,892	-	yibP	b3613	0.82	-0.4
3,785,899	+	yibP	b3613	0.82	+1.3
3,785,984	+	yibP	b3613	0.89	-1.4
3,785,987	-	yibP	b3613	0.89	-2.0
3,786,002	+				-0.1
3,786,007	+				-0.1
3,786,022	-				+1.9
3,786,095	+				-0.2
3,786,182	-				+0.3
3,786,182	-				+0.6
3,786,182	-				+2.2
3,786,184	+				+0.5
3,786,278	+	yibQ	b3614	0.16	+0.1
3,786,283	+	yibQ	b3614	0.17	+1.6
3,786,283	-	yibQ	b3614	0.17	+0.3
3,786,283	-	yibQ	b3614	0.17	+0.5
3,786,291	-	yibQ	b3614	0.17	+0.1
3,786,291	-	yibQ	b3614	0.17	-0.5
3,786,291	-	yibQ	b3614	0.17	-0.2
3,786,327	+	yibQ	b3614	0.21	+0.0
3,786,372	+	yibQ	b3614	0.26	+0.5
3,786,422	-	yibQ	b3614	0.31	-0.1
3,786,483	+	yibQ	b3614	0.37	-0.7
3,786,483	+	yibQ	b3614	0.37	+0.5
3,786,509	+	yibQ	b3614	0.40	-0.1
3,786,544	+	yibQ	b3614	0.44	-0.0
3,786,555	+	yibQ	b3614	0.45	-0.2
3,786,597	-	yibQ	b3614	0.49	-0.4
3,786,598	-	yibQ	b3614	0.49	+0.7
3,786,598	-	yibQ	b3614	0.49	+0.3
3,786,621	-	yibQ	b3614	0.52	+0.3
3,786,625	+	yibQ	b3614	0.52	-0.1
3,786,625	+	yibQ	b3614	0.52	+0.3
3,786,745	+	yibQ	b3614	0.65	-0.7
3,786,758	-	yibQ	b3614	0.66	-0.3
3,786,758	-	yibQ	b3614	0.66	-0.8
3,786,758	-	yibQ	b3614	0.66	+0.1
3,786,758	-	yibQ	b3614	0.66	-0.5
3,786,764	-	yibQ	b3614	0.67	-0.9
3,786,787	+	yibQ	b3614	0.69	+0.1
3,786,787	+	yibQ	b3614	0.69	-0.1
3,786,806	+	yibQ	b3614	0.71	-0.9
3,786,806	+	yibQ	b3614	0.71	-0.1
3,786,814	-	yibQ	b3614	0.72	-0.2
3,786,857	-	yibQ	b3614	0.76	+0.8
3,786,894	+	yibQ	b3614	0.80	+0.2
3,786,902	-	yibQ	b3614	0.81	+0.6
3,786,911	+	yibQ	b3614	0.82	-0.9
3,786,921	+	yibQ	b3614	0.83	-0.8
3,786,921	+	yibQ	b3614	0.83	-0.7
3,786,939	+	yibQ	b3614	0.85	+0.0
3,786,956	-	yibQ	b3614	0.87	-0.0
3,786,956	-	yibQ	b3614	0.87	-0.0
3,787,018	-				+0.2
3,787,026	+				-0.6
3,787,028	-				-0.5
3,787,029	-				+1.6
3,787,032	+				-0.4
3,787,037	+				+1.0
3,787,037	+				-0.0
3,787,041	-				+0.6
3,787,045	-				+0.7
3,787,045	-				-0.4
3,787,047	+				+0.1
3,787,068	+				+0.3
3,787,068	+				-0.6
3,787,087	+				-0.5
3,787,098	+				-0.3
3,787,098	+				-1.0
3,787,100	+				+0.3
3,787,101	-				+0.4
3,787,106	+				+0.4
3,787,106	+				-0.3