Strain Fitness in Escherichia coli BW25113 around b3843

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
4,022,055	+	tatD	b4483	0.61	+0.2
4,022,055	+	tatD	b4483	0.61	+0.1
4,022,056	-	tatD	b4483	0.61	-0.4
4,022,124	+	tatD	b4483	0.70	+0.6
4,022,191	+	tatD	b4483	0.78	+0.3
4,022,223	+	tatD	b4483	0.83	+0.3
4,022,252	-	tatD	b4483	0.86	+0.6
4,022,261	+	tatD	b4483	0.87	+0.2
4,022,271	+	tatD	b4483	0.89	+1.7
4,022,271	+	tatD	b4483	0.89	-0.2
4,022,271	+	tatD	b4483	0.89	+0.0
4,022,271	+	tatD	b4483	0.89	-0.0
4,022,284	+				-0.2
4,022,284	+				+0.2
4,022,284	+				-0.3
4,022,284	-				+0.1
4,022,293	+				-0.3
4,022,294	+				+0.3
4,022,306	-				+0.3
4,022,306	-				+0.0
4,022,327	-				-0.8
4,022,339	-				-0.1
4,022,353	+				-0.2
4,022,353	+				+0.2
4,022,376	-				-0.5
4,022,376	-				-0.4
4,022,379	+				+0.1
4,022,379	+				-0.2
4,022,387	-				+0.2
4,022,389	-				-0.5
4,022,399	-				-0.0
4,022,424	+	rfaH	b3842	0.14	-0.6
4,022,424	+	rfaH	b3842	0.14	-0.4
4,022,431	-	rfaH	b3842	0.15	+1.1
4,022,434	+	rfaH	b3842	0.16	+0.1
4,022,437	-	rfaH	b3842	0.17	+0.4
4,022,495	-	rfaH	b3842	0.28	-0.7
4,022,500	-	rfaH	b3842	0.29	-0.1
4,022,500	-	rfaH	b3842	0.29	-0.3
4,022,557	+	rfaH	b3842	0.41	+0.6
4,022,559	+	rfaH	b3842	0.42	-0.2
4,022,563	+	rfaH	b3842	0.42	-0.3
4,022,585	+	rfaH	b3842	0.47	-0.1
4,022,624	-	rfaH	b3842	0.55	-1.0
4,022,634	+	rfaH	b3842	0.57	+0.7
4,022,650	-	rfaH	b3842	0.60	-0.7
4,022,688	-	rfaH	b3842	0.68	+0.4
4,022,701	+	rfaH	b3842	0.71	-0.3
4,022,701	+	rfaH	b3842	0.71	-0.5
4,022,709	+	rfaH	b3842	0.72	+0.8
4,022,759	+	rfaH	b3842	0.82	-0.4
4,022,762	-	rfaH	b3842	0.83	+0.1
4,022,764	+	rfaH	b3842	0.83	+0.3
4,022,765	+	rfaH	b3842	0.84	+0.4
4,022,777	+	rfaH	b3842	0.86	-0.1
4,022,793	-	rfaH	b3842	0.89	+0.5
4,022,813	+				+0.4
4,022,816	+				+0.7
4,022,824	+				+0.2
4,022,849	+				-0.2
4,022,857	-				-0.1
4,022,884	-				+0.0
4,022,905	-				+0.7
4,022,920	+				-0.9
4,022,980	+				+0.2
4,022,980	+				-0.7
4,022,986	+				-1.1
4,022,996	+				+0.3
4,022,996	+				+0.4
4,022,996	+				-0.1
4,022,996	+				+0.2
4,023,004	-				-0.0
4,023,004	-				+0.2
4,023,037	+				-1.3
4,023,037	+				+0.6
4,023,043	-				-0.2
4,024,500	+				-0.5
4,024,586	+				-0.8
4,024,586	+				-1.5
4,024,586	-				-1.9
4,024,586	-				-1.3
4,024,599	+				-2.1
4,024,600	+				-0.7
4,024,600	+				+0.3
4,024,608	-				-3.0
4,024,608	-				-1.9
4,024,649	+	fre	b3844	0.14	-1.8
4,024,674	-	fre	b3844	0.18	-3.1
4,024,693	+	fre	b3844	0.20	-2.2
4,024,701	-	fre	b3844	0.22	-0.1
4,024,780	+	fre	b3844	0.33	-1.7
4,024,780	+	fre	b3844	0.33	-2.2
4,024,801	-	fre	b3844	0.36	-0.6
4,024,823	+	fre	b3844	0.39	-0.5
4,024,856	-	fre	b3844	0.44	-1.9
4,024,856	-	fre	b3844	0.44	-3.0
4,024,891	+	fre	b3844	0.49	+0.5
4,024,898	-	fre	b3844	0.50	-1.8
4,024,905	+	fre	b3844	0.51	-1.2
4,024,905	+	fre	b3844	0.51	-1.9
4,024,968	+	fre	b3844	0.60	-2.6
4,024,968	+	fre	b3844	0.60	-0.8
4,024,971	+	fre	b3844	0.60	-3.1
4,024,976	-	fre	b3844	0.61	-3.3
4,024,994	-	fre	b3844	0.63	-1.3
4,025,044	+	fre	b3844	0.70	-3.6
4,025,068	+	fre	b3844	0.74	-2.2
4,025,105	+				-0.4
4,025,132	-	fre	b3844	0.83	-1.1
4,025,208	-				-0.9
4,025,285	-				+0.1
4,025,293	+				+0.6
4,025,307	-				-1.7
4,025,307	-				+0.5
4,025,341	-				-0.2
4,025,376	-				+0.4
4,025,376	-				-0.2
4,025,410	-				+0.1
4,025,437	+				-1.1
4,025,437	+				+0.3
4,025,442	-				-1.4
4,025,442	-				-0.8
4,025,451	-				-0.1
4,025,451	-				-0.1