Strain Fitness in Escherichia coli BW25113 around b3413

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,541,913	+	yhgA	b3411	0.82	-0.2
3,541,963	+	yhgA	b3411	0.88	-0.4
3,541,968	+	yhgA	b3411	0.89	-0.2
3,541,986	-				-0.3
3,541,986	-				+1.2
3,542,095	+				+0.3
3,542,103	-				+0.0
3,542,109	-				-0.2
3,542,115	-				-0.4
3,542,182	-	bioH	b3412	0.11	+0.1
3,542,182	-	bioH	b3412	0.11	-0.7
3,542,236	+	bioH	b3412	0.18	+0.5
3,542,244	-	bioH	b3412	0.19	+0.4
3,542,244	-	bioH	b3412	0.19	-0.3
3,542,244	-	bioH	b3412	0.19	+0.2
3,542,244	-	bioH	b3412	0.19	-1.0
3,542,361	+	bioH	b3412	0.34	+0.5
3,542,361	+	bioH	b3412	0.34	+0.2
3,542,366	+	bioH	b3412	0.35	+0.2
3,542,405	-	bioH	b3412	0.40	+0.1
3,542,441	-	bioH	b3412	0.45	+1.0
3,542,576	+	bioH	b3412	0.62	+1.0
3,542,576	+	bioH	b3412	0.62	+0.2
3,542,580	+	bioH	b3412	0.63	-1.1
3,542,584	+	bioH	b3412	0.63	-0.7
3,542,593	-	bioH	b3412	0.64	-0.7
3,542,692	+	bioH	b3412	0.77	-0.2
3,542,741	-	bioH	b3412	0.84	+0.2
3,542,741	-	bioH	b3412	0.84	-0.4
3,542,767	+	bioH	b3412	0.87	+0.4
3,542,767	+	bioH	b3412	0.87	-0.2
3,542,775	-	bioH	b3412	0.88	+0.3
3,542,775	-	bioH	b3412	0.88	+0.1
3,542,785	-	bioH	b3412	0.89	-0.8
3,542,797	+				+0.0
3,542,797	+				-0.6
3,542,800	-				+0.0
3,542,805	-				+0.3
3,542,805	-				+0.4
3,542,805	-				-0.0
3,542,812	-				-0.1
3,542,826	+				-0.8
3,542,830	+				+0.2
3,542,830	+				+0.2
3,542,893	+				-0.2
3,542,903	+				+0.1
3,542,903	+				-0.2
3,542,953	-				+0.8
3,542,953	-				-0.1
3,542,974	-	yhgH	b3413	0.10	-0.5
3,542,974	-	yhgH	b3413	0.10	-0.6
3,543,006	+	yhgH	b3413	0.15	+0.1
3,543,028	-	yhgH	b3413	0.18	+0.3
3,543,093	-	yhgH	b3413	0.28	-0.3
3,543,102	+	yhgH	b3413	0.29	-0.7
3,543,102	+	yhgH	b3413	0.29	+0.0
3,543,130	+	yhgH	b3413	0.33	-0.3
3,543,140	-	yhgH	b3413	0.35	+0.2
3,543,185	-	yhgH	b3413	0.41	-0.6
3,543,194	-	yhgH	b3413	0.42	+0.1
3,543,194	-	yhgH	b3413	0.42	-0.1
3,543,214	+	yhgH	b3413	0.45	-1.7
3,543,218	+	yhgH	b3413	0.46	+0.4
3,543,300	-	yhgH	b3413	0.58	-0.1
3,543,362	+	yhgH	b3413	0.67	+0.6
3,543,377	+	yhgH	b3413	0.69	-0.2
3,543,379	-	yhgH	b3413	0.69	-0.3
3,543,379	-	yhgH	b3413	0.69	-0.9
3,543,385	-	yhgH	b3413	0.70	-0.0
3,543,411	-	yhgH	b3413	0.74	-0.2
3,543,411	-	yhgH	b3413	0.74	-0.2
3,543,450	-	yhgH	b3413	0.80	-0.4
3,543,472	+	yhgH	b3413	0.83	+0.2
3,543,477	+	yhgH	b3413	0.84	-0.5
3,543,552	-				-0.4
3,543,555	+				-0.3
3,543,580	-				-0.2
3,543,580	-				-1.3
3,543,595	+				-0.2
3,543,632	+				-0.7
3,543,706	+	gntY	b3414	0.10	-2.3
3,543,706	+	gntY	b3414	0.10	-2.7
3,543,727	+	gntY	b3414	0.14	-2.4
3,543,737	+	gntY	b3414	0.16	-1.6
3,543,737	+	gntY	b3414	0.16	-2.3
3,543,737	+	gntY	b3414	0.16	-0.3
3,543,790	+	gntY	b3414	0.25	-3.7
3,543,796	+	gntY	b3414	0.26	-2.5
3,543,808	+	gntY	b3414	0.28	-3.0
3,543,836	+				+0.0
3,543,836	+	gntY	b3414	0.33	-2.5
3,543,836	+	gntY	b3414	0.33	-1.0
3,543,849	+	gntY	b3414	0.35	-2.1
3,543,849	+	gntY	b3414	0.35	-2.8
3,543,860	+	gntY	b3414	0.37	-3.5
3,543,953	+	gntY	b3414	0.53	-2.5
3,543,964	+	gntY	b3414	0.55	-4.1
3,543,966	+	gntY	b3414	0.56	-1.7
3,543,966	+	gntY	b3414	0.56	-1.3
3,543,988	-	gntY	b3414	0.59	-2.2
3,543,991	-	gntY	b3414	0.60	-1.1
3,544,004	+	gntY	b3414	0.62	-3.6
3,544,026	-	gntY	b3414	0.66	-2.8
3,544,095	+	gntY	b3414	0.78	-2.4
3,544,181	+				+0.0
3,544,232	+				-0.1
3,544,232	+				-0.2
3,544,232	+				-1.5
3,544,240	-				-0.3
3,544,240	-				+0.3
3,544,286	-				-0.3
3,544,286	-				-0.8
3,544,288	-				+0.8
3,544,305	+				+0.6
3,544,320	-				-0.1
3,544,322	-				-0.3
3,544,329	-				+0.3
3,544,329	-				+0.2
3,544,391	+				-0.0
3,544,404	+				+0.3
3,544,404	+				+0.4
3,544,456	-				-0.0
3,544,457	+				-0.2
3,544,457	+				+0.7
3,544,493	+				-1.1
3,544,507	-				-0.4