Strain Fitness in Escherichia coli BW25113 around b2907

Experiment: Ying_AminoAcid20 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 3
3,049,365	+	visC	b2906	0.19	+0.9
3,049,406	+	visC	b2906	0.22	-0.8
3,049,458	+	visC	b2906	0.27	-3.9
3,049,474	-	visC	b2906	0.28	-0.5
3,049,536	+	visC	b2906	0.33	-0.1
3,049,544	-	visC	b2906	0.34	-2.1
3,049,544	-	visC	b2906	0.34	-0.4
3,049,546	-	visC	b2906	0.34	-0.3
3,049,546	-	visC	b2906	0.34	-0.9
3,049,546	-	visC	b2906	0.34	-0.1
3,049,549	+	visC	b2906	0.34	-1.1
3,049,563	-	visC	b2906	0.35	+0.1
3,049,632	+	visC	b2906	0.41	-0.8
3,049,947	+	visC	b2906	0.67	-1.8
3,049,947	+	visC	b2906	0.67	-1.3
3,049,999	-	visC	b2906	0.72	-0.8
3,049,999	-	visC	b2906	0.72	-0.6
3,050,041	+	visC	b2906	0.75	-1.0
3,050,041	+	visC	b2906	0.75	-0.2
3,050,041	-	visC	b2906	0.75	-0.0
3,050,093	+	visC	b2906	0.79	-0.9
3,050,093	+	visC	b2906	0.79	-1.7
3,050,093	+	visC	b2906	0.79	-0.5
3,050,093	-	visC	b2906	0.79	-1.2
3,050,184	+	visC	b2906	0.87	-1.6
3,050,241	+				+0.7
3,050,241	+				-0.7
3,050,370	+				+0.1
3,050,370	+				-2.0
3,050,376	+				+0.7
3,050,376	+				-0.5
3,050,399	-				-0.9
3,051,565	-				+0.1
3,051,565	-				+0.5
3,051,690	-	pepP	b2908	0.12	+1.2
3,051,724	+	pepP	b2908	0.14	-0.4
3,051,725	-	pepP	b2908	0.14	+0.5
3,051,725	-	pepP	b2908	0.14	-0.3
3,051,801	-	pepP	b2908	0.20	-0.4
3,051,801	-	pepP	b2908	0.20	+0.1
3,051,808	-	pepP	b2908	0.20	+0.6
3,051,808	-	pepP	b2908	0.20	-0.5
3,051,857	-	pepP	b2908	0.24	-0.4
3,051,904	-	pepP	b2908	0.28	-0.5
3,051,956	-	pepP	b2908	0.32	+0.1
3,052,034	-	pepP	b2908	0.37	+0.5
3,052,084	+	pepP	b2908	0.41	-0.2
3,052,131	+	pepP	b2908	0.45	-0.3
3,052,131	+	pepP	b2908	0.45	-0.1
3,052,176	-	pepP	b2908	0.48	-0.8
3,052,237	-	pepP	b2908	0.53	+0.1
3,052,237	-	pepP	b2908	0.53	+0.0
3,052,360	+	pepP	b2908	0.62	-1.8
3,052,442	-	pepP	b2908	0.68	+0.3
3,052,447	-	pepP	b2908	0.69	+0.2
3,052,458	-	pepP	b2908	0.69	-0.3