Strain Fitness in Escherichia coli BW25113 around b3992

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
4,190,005	-	thiG	b3991	0.15	+0.3
4,190,005	-	thiG	b3991	0.15	+0.5
4,190,187	-	thiG	b3991	0.39	-0.5
4,190,187	-	thiG	b3991	0.39	-0.1
4,190,253	+	thiG	b3991	0.47	-0.1
4,190,267	-	thiG	b3991	0.49	-0.1
4,190,267	-	thiG	b3991	0.49	-0.1
4,190,270	+	thiG	b3991	0.50	-0.8
4,190,270	+	thiG	b3991	0.50	+0.1
4,190,278	-	thiG	b3991	0.51	-0.0
4,190,278	-	thiG	b3991	0.51	+0.0
4,190,287	-	thiG	b3991	0.52	-0.5
4,190,306	-	thiG	b3991	0.54	+0.8
4,190,306	-	thiG	b3991	0.54	-0.3
4,190,404	+	thiG	b3991	0.67	-1.0
4,190,412	-	thiG	b3991	0.68	+0.5
4,190,528	-	thiG	b3991	0.83	+0.3
4,190,579	+	thiG	b3991	0.90	-0.7
4,190,581	+	thiG	b3991	0.90	+0.5
4,190,581	+	thiG	b3991	0.90	-0.3
4,190,584	-				+0.3
4,190,586	-				-0.1
4,190,791	+	thiS	b4407	0.65	+0.4
4,190,820	+	thiS	b4407	0.80	-0.6
4,190,830	+	thiS	b4407	0.85	-0.1
4,190,860	-				-0.3
4,190,908	-				-0.9
4,190,968	-	thiF	b3992	0.16	+0.1
4,190,968	-	thiF	b3992	0.16	+0.2
4,191,030	+	thiF	b3992	0.25	+0.2
4,191,121	+	thiF	b3992	0.37	+0.1
4,191,121	+	thiF	b3992	0.37	-0.2
4,191,129	-	thiF	b3992	0.38	-0.6
4,191,234	+	thiF	b3992	0.52	+0.2
4,191,236	-	thiF	b3992	0.52	+0.1
4,191,248	+	thiF	b3992	0.53	+2.4
4,191,269	+	thiF	b3992	0.56	+0.6
4,191,282	-	thiF	b3992	0.58	+0.1
4,191,310	-	thiF	b3992	0.62	+0.4
4,191,368	-	thiF	b3992	0.69	-0.1
4,191,376	+	thiF	b3992	0.70	-0.8
4,191,468	-	thiF	b3992	0.83	-0.2
4,191,475	-	thiF	b3992	0.83	+0.3
4,191,475	-	thiF	b3992	0.83	+0.1
4,191,483	-	thiF	b3992	0.85	-0.6
4,191,483	-	thiF	b3992	0.85	+0.2
4,191,489	+	thiF	b3992	0.85	-0.3
4,191,489	+	thiF	b3992	0.85	+1.9
4,191,489	+	thiF	b3992	0.85	+0.2
4,191,489	+	thiF	b3992	0.85	-0.4
4,191,680	+	thiE	b3993	0.14	-0.3
4,191,690	+	thiE	b3993	0.15	-1.6
4,191,731	-	thiE	b3993	0.22	+0.7
4,191,755	+	thiE	b3993	0.26	-0.3
4,191,755	+	thiE	b3993	0.26	+0.3
4,191,859	-	thiE	b3993	0.42	-0.3
4,191,869	-	thiE	b3993	0.44	+1.0
4,191,938	+	thiE	b3993	0.54	+0.6
4,191,983	-	thiE	b3993	0.61	+0.1
4,191,995	-	thiE	b3993	0.63	+0.1
4,191,995	-	thiE	b3993	0.63	+0.4
4,192,021	-	thiE	b3993	0.67	+0.5
4,192,021	-	thiE	b3993	0.67	+0.7
4,192,054	-	thiE	b3993	0.73	+0.1
4,192,054	-	thiE	b3993	0.73	-0.3
4,192,122	-	thiE	b3993	0.83	-1.7
4,192,122	-	thiE	b3993	0.83	-0.9
4,192,151	+	thiE	b3993	0.88	+1.2
4,192,151	+	thiE	b3993	0.88	-0.2
4,192,156	+	thiE	b3993	0.89	-1.5
4,192,158	+	thiE	b3993	0.89	-0.1
4,192,165	+				-0.1
4,192,165	+				+0.4
4,192,167	-				+0.1
4,192,167	-				-0.8
4,192,175	+				-1.0
4,192,175	+				+0.2
4,192,176	-				-1.5
4,192,180	+				+0.3
4,192,183	-				+0.2
4,192,183	-				-0.0
4,192,183	-				+0.5
4,192,410	-				+0.0
4,192,474	+	thiC	b3994	0.13	+0.2
4,192,474	+	thiC	b3994	0.13	+0.5
4,192,547	+	thiC	b3994	0.17	-0.8
4,192,576	-	thiC	b3994	0.18	+0.3
4,192,576	-	thiC	b3994	0.18	-0.1