Strain Fitness in Escherichia coli BW25113 around b3963

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
4,158,157	+	udhA	b3962	0.53	-0.3
4,158,224	-	udhA	b3962	0.58	-1.0
4,158,248	-	udhA	b3962	0.60	-0.2
4,158,258	+	udhA	b3962	0.60	+0.8
4,158,284	-	udhA	b3962	0.62	-0.7
4,158,343	+	udhA	b3962	0.66	-0.5
4,158,361	+	udhA	b3962	0.68	+0.0
4,158,361	+	udhA	b3962	0.68	-1.5
4,158,366	+	udhA	b3962	0.68	-2.6
4,158,369	-	udhA	b3962	0.68	-1.7
4,158,369	-	udhA	b3962	0.68	+0.1
4,158,371	-	udhA	b3962	0.68	-3.3
4,158,450	-	udhA	b3962	0.74	-2.6
4,158,458	-	udhA	b3962	0.75	-0.4
4,158,458	-	udhA	b3962	0.75	-2.1
4,158,480	-				-0.2
4,158,480	-	udhA	b3962	0.76	+0.6
4,158,495	-	udhA	b3962	0.77	+2.6
4,158,550	+	udhA	b3962	0.81	-0.8
4,158,550	+	udhA	b3962	0.81	-1.5
4,158,550	+	udhA	b3962	0.81	+0.0
4,158,550	+	udhA	b3962	0.81	-1.5
4,158,550	+	udhA	b3962	0.81	-1.2
4,158,626	-	udhA	b3962	0.87	-1.7
4,158,637	-	udhA	b3962	0.87	-1.1
4,158,655	+	udhA	b3962	0.89	-1.6
4,158,665	+	udhA	b3962	0.89	-1.7
4,158,673	+	udhA	b3962	0.90	+0.6
4,158,730	+				-2.0
4,158,737	+				-2.0
4,158,775	+				-2.6
4,158,783	-				-1.8
4,158,783	-				-1.8
4,158,807	-				-0.9
4,158,821	-				-1.0
4,158,821	-				-1.2
4,158,821	-				-0.9
4,158,823	+				-3.4
4,158,973	+				-0.2
4,158,981	-				-1.4
4,159,070	+				-0.0
4,159,099	+				-1.3
4,159,101	+				+0.1
4,159,157	-				-0.9
4,159,159	-				+0.7
4,159,215	-	fabR	b3963	0.10	+0.8
4,159,220	-	fabR	b3963	0.11	+0.9
4,159,220	-	fabR	b3963	0.11	+0.4
4,159,237	-	fabR	b3963	0.14	-0.8
4,159,237	-	fabR	b3963	0.14	+0.0
4,159,238	+	fabR	b3963	0.14	+0.6
4,159,238	+	fabR	b3963	0.14	-0.1
4,159,278	-	fabR	b3963	0.20	+0.7
4,159,291	-	fabR	b3963	0.22	+0.6
4,159,291	-	fabR	b3963	0.22	+0.6
4,159,321	+	fabR	b3963	0.27	-0.7
4,159,351	+	fabR	b3963	0.31	+0.8
4,159,352	+	fabR	b3963	0.32	+0.9
4,159,354	-	fabR	b3963	0.32	+0.5
4,159,356	+	fabR	b3963	0.32	+0.8
4,159,402	+	fabR	b3963	0.39	+0.9
4,159,402	+	fabR	b3963	0.39	+0.4
4,159,403	+	fabR	b3963	0.40	+0.8
4,159,424	+	fabR	b3963	0.43	+0.6
4,159,445	+	fabR	b3963	0.46	+0.6
4,159,559	+	fabR	b3963	0.64	+0.2
4,159,559	+	fabR	b3963	0.64	+0.8
4,159,629	+	fabR	b3963	0.74	+0.7
4,159,643	-	fabR	b3963	0.77	+0.6
4,159,656	-	fabR	b3963	0.79	+0.7
4,159,697	+	fabR	b3963	0.85	+1.0
4,159,697	+	fabR	b3963	0.85	+1.0
4,159,699	-	fabR	b3963	0.85	+0.4
4,159,699	-	fabR	b3963	0.85	+0.6
4,159,726	+	fabR	b3963	0.89	+0.6
4,159,726	+	fabR	b3963	0.89	+0.8
4,159,734	-				+1.7
4,159,789	+				+0.1
4,159,799	-				-1.2
4,159,811	+				+0.1
4,159,811	+				+0.1
4,159,822	+				+0.4
4,159,822	+				+0.4
4,159,824	-				+1.1
4,159,905	-	yijD	b3964	0.31	-0.1
4,159,932	+	yijD	b3964	0.38	-0.2
4,159,932	+	yijD	b3964	0.38	-0.0
4,159,953	+	yijD	b3964	0.44	-0.7
4,159,954	+	yijD	b3964	0.44	-1.2
4,159,963	+	yijD	b3964	0.47	+0.5
4,159,966	+	yijD	b3964	0.48	-1.1
4,160,019	+	yijD	b3964	0.62	-0.4
4,160,019	+	yijD	b3964	0.62	+0.5
4,160,019	+	yijD	b3964	0.62	-0.7
4,160,019	+	yijD	b3964	0.62	-0.5
4,160,021	+	yijD	b3964	0.63	-0.1
4,160,021	+	yijD	b3964	0.63	-0.6
4,160,021	+	yijD	b3964	0.63	+1.0
4,160,022	+	yijD	b3964	0.63	-0.1
4,160,027	-	yijD	b3964	0.65	-0.2
4,160,027	-	yijD	b3964	0.65	-0.4
4,160,032	-	yijD	b3964	0.66	+2.3
4,160,035	-	yijD	b3964	0.67	-0.5
4,160,035	-	yijD	b3964	0.67	-0.1
4,160,110	-	yijD	b3964	0.88	-0.1
4,160,113	+	yijD	b3964	0.89	+0.0
4,160,136	-				+0.6
4,160,177	-				-0.4
4,160,177	-				+0.3
4,160,190	+				+0.2
4,160,196	-				-0.1
4,160,205	+				+0.6
4,160,207	+				-1.3
4,160,207	+				-0.7
4,160,207	+				-0.9
4,160,222	+				-0.3
4,160,222	+				-0.2
4,160,229	-				+0.0
4,160,229	-				-0.7
4,160,236	+				-0.6
4,160,236	+				-0.3
4,160,241	-				+0.5
4,160,244	-				+0.4
4,160,244	-				-0.1
4,160,244	-				-0.3
4,160,244	-				-0.5
4,160,244	-				-1.2
4,160,279	-				-0.0
4,160,291	-				-0.7
4,160,313	+	trmA	b3965	0.11	-1.3
4,160,313	+	trmA	b3965	0.11	-0.4
4,160,352	-	trmA	b3965	0.14	-1.7
4,160,366	+	trmA	b3965	0.16	-0.3
4,160,371	+	trmA	b3965	0.16	-1.4
4,160,384	-	trmA	b3965	0.17	-0.4
4,160,391	-	trmA	b3965	0.18	-0.0
4,160,470	+	trmA	b3965	0.25	-0.5
4,160,530	-	trmA	b3965	0.31	-0.5
4,160,544	+	trmA	b3965	0.32	-0.2
4,160,547	-	trmA	b3965	0.32	+0.0
4,160,547	-	trmA	b3965	0.32	-0.4
4,160,549	-	trmA	b3965	0.32	+0.2
4,160,555	-	trmA	b3965	0.33	-1.1
4,160,568	-	trmA	b3965	0.34	-0.4
4,160,648	-	trmA	b3965	0.41	-1.4
4,160,673	+	trmA	b3965	0.44	+0.4
4,160,673	+	trmA	b3965	0.44	+0.3
4,160,686	+	trmA	b3965	0.45	-0.5
4,160,687	-	trmA	b3965	0.45	-0.8
4,160,687	-	trmA	b3965	0.45	-0.5
4,160,734	-	trmA	b3965	0.49	+0.2
4,160,751	-	trmA	b3965	0.51	-0.8
4,160,767	-	trmA	b3965	0.52	-0.3
4,160,767	-	trmA	b3965	0.52	-0.4
4,160,781	+	trmA	b3965	0.53	-1.6
4,160,781	-	trmA	b3965	0.53	+0.2