Strain Fitness in Escherichia coli BW25113 around b3398

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,523,518	+				+0.2
3,523,577	+				-0.2
3,523,587	+				-0.3
3,523,587	+				-0.5
3,523,593	-				-0.7
3,523,608	+				+0.8
3,523,608	+				-0.7
3,523,608	+				+0.0
3,523,608	+				+0.6
3,523,608	+				-0.0
3,523,628	+				-0.5
3,523,628	+				-0.3
3,523,635	-				-0.9
3,523,635	-				-0.0
3,523,657	-				+0.2
3,523,662	+				+0.1
3,523,663	+				+0.5
3,523,666	-				+0.4
3,523,666	-				-0.3
3,523,670	-	nudE	b3397	0.11	+0.4
3,523,713	-	nudE	b3397	0.18	-0.4
3,523,742	+	nudE	b3397	0.23	+0.2
3,523,742	+	nudE	b3397	0.23	-0.1
3,523,745	-	nudE	b3397	0.24	+0.2
3,523,788	+	nudE	b3397	0.32	+0.2
3,523,788	+	nudE	b3397	0.32	+0.1
3,523,797	-	nudE	b3397	0.33	-0.1
3,523,797	-	nudE	b3397	0.33	-0.6
3,523,823	+	nudE	b3397	0.38	+0.5
3,523,823	+	nudE	b3397	0.38	-0.4
3,523,868	+	nudE	b3397	0.46	-0.0
3,523,933	-	nudE	b3397	0.57	-0.7
3,523,933	-	nudE	b3397	0.57	-0.0
3,523,933	-	nudE	b3397	0.57	-0.1
3,523,972	+	nudE	b3397	0.64	+0.5
3,523,980	-	nudE	b3397	0.66	-0.9
3,523,983	+	nudE	b3397	0.66	-2.1
3,524,017	+	nudE	b3397	0.72	+0.1
3,524,045	-	nudE	b3397	0.77	+0.2
3,524,060	-	nudE	b3397	0.80	-0.1
3,524,060	-	nudE	b3397	0.80	+0.4
3,524,071	+	nudE	b3397	0.82	+0.6
3,524,077	-	nudE	b3397	0.83	+0.4
3,524,101	+	nudE	b3397	0.87	-0.1
3,524,111	-	nudE	b3397	0.89	-0.3
3,524,129	-				-0.4
3,524,177	+				+0.7
3,524,179	-				+0.0
3,524,179	-				+0.2
3,524,185	-				-0.1
3,524,185	-				+0.4
3,524,186	+				-0.1
3,524,220	+				+0.5
3,524,231	+				-0.4
3,524,231	+				+0.7
3,524,294	+				-0.0
3,524,356	-				-1.2
3,524,375	-				+0.6
3,524,379	+				-1.2
3,524,379	+				+0.3
3,524,387	-				+0.8
3,524,394	+				-0.5
3,524,394	+				-0.2
3,524,395	+				-0.0
3,524,432	+				+0.5
3,524,445	-				+0.4
3,524,460	+				-0.1
3,524,467	-				+0.7
3,524,467	-				+0.1
3,524,469	+				-0.3
3,524,521	+				-0.8
3,524,538	+				-2.2
3,524,538	+				+0.4
3,524,584	+				-0.5
3,524,590	+				+0.7
3,524,718	+	yrfF	b3398	0.11	+0.0
3,524,733	+	yrfF	b3398	0.11	-1.2
3,524,748	+	yrfF	b3398	0.12	-0.6
3,524,763	+	yrfF	b3398	0.13	-2.4
3,524,850	+	yrfF	b3398	0.17	+1.1
3,524,895	+	yrfF	b3398	0.19	+0.6
3,524,944	+	yrfF	b3398	0.21	+1.6
3,524,979	+	yrfF	b3398	0.23	+1.0
3,524,979	+	yrfF	b3398	0.23	+0.6
3,526,576	-				-0.2
3,526,586	+				+0.4
3,526,594	+				+2.6
3,526,607	+				+0.5
3,526,607	+				+1.0
3,526,629	-				+0.4
3,526,630	-				+0.3
3,526,630	-				+0.1
3,526,644	+				+0.1
3,526,650	-				-1.1
3,526,650	-				-0.3
3,526,654	-				+0.4
3,526,654	-				+0.0
3,526,654	-				-0.2
3,526,666	+				-0.0
3,526,704	-				+0.6
3,526,715	+				+0.1
3,526,715	+				+1.0
3,526,725	-				-0.9
3,526,725	-				+0.4
3,526,725	-				-0.7
3,526,727	+				-0.8
3,526,741	+				+0.2
3,526,754	-				+0.2
3,526,759	-	yrfG	b3399	0.10	+0.9
3,526,774	-	yrfG	b3399	0.12	+0.1
3,526,805	-	yrfG	b3399	0.17	-0.7
3,526,857	+	yrfG	b3399	0.25	+0.0
3,526,859	+	yrfG	b3399	0.25	+0.6
3,526,859	+	yrfG	b3399	0.25	-0.1
3,526,876	+	yrfG	b3399	0.28	+0.4
3,526,876	+	yrfG	b3399	0.28	+0.1
3,526,880	+	yrfG	b3399	0.28	-0.6
3,526,880	+	yrfG	b3399	0.28	-0.3
3,526,884	-	yrfG	b3399	0.29	-0.1
3,526,888	-	yrfG	b3399	0.29	-1.0
3,526,888	-	yrfG	b3399	0.29	-0.4
3,526,894	-	yrfG	b3399	0.30	+0.2
3,526,899	-	yrfG	b3399	0.31	-0.0
3,526,899	-	yrfG	b3399	0.31	+0.1
3,526,911	-	yrfG	b3399	0.33	+0.0
3,526,911	-	yrfG	b3399	0.33	+0.3
3,526,921	-	yrfG	b3399	0.34	+0.2
3,526,954	-	yrfG	b3399	0.39	-0.1
3,526,954	-	yrfG	b3399	0.39	+0.5
3,526,962	+	yrfG	b3399	0.41	-0.4
3,526,973	+	yrfG	b3399	0.42	+0.8
3,526,990	+	yrfG	b3399	0.45	-0.2
3,527,045	-	yrfG	b3399	0.53	+0.6
3,527,048	+	yrfG	b3399	0.53	+0.3
3,527,055	+	yrfG	b3399	0.54	-0.4
3,527,056	-	yrfG	b3399	0.55	-0.6
3,527,079	-	yrfG	b3399	0.58	-0.9
3,527,079	-	yrfG	b3399	0.58	-0.9
3,527,081	+	yrfG	b3399	0.58	+0.3
3,527,089	-	yrfG	b3399	0.59	-0.8
3,527,162	-	yrfG	b3399	0.70	-0.8
3,527,162	-	yrfG	b3399	0.70	-0.2
3,527,200	+	yrfG	b3399	0.76	+0.3
3,527,207	+	yrfG	b3399	0.77	-0.5
3,527,207	+	yrfG	b3399	0.77	+0.1
3,527,212	+	yrfG	b3399	0.78	-0.4
3,527,214	+	yrfG	b3399	0.78	+0.7
3,527,259	+	yrfG	b3399	0.85	+0.8
3,527,259	+	yrfG	b3399	0.85	+0.1
3,527,313	+				-0.1
3,527,332	-				-0.1
3,527,372	-				-0.1
3,527,372	-				+0.3
3,527,383	+				-0.3
3,527,392	+				-0.5
3,527,411	+	hslR	b3400	0.10	+0.7
3,527,411	+	hslR	b3400	0.10	+0.1
3,527,414	-	hslR	b3400	0.11	-0.2
3,527,414	-	hslR	b3400	0.11	-0.1
3,527,419	-	hslR	b3400	0.12	+0.4
3,527,424	-	hslR	b3400	0.13	+0.3
3,527,442	+	hslR	b3400	0.18	-0.5
3,527,442	+	hslR	b3400	0.18	+0.0
3,527,449	+	hslR	b3400	0.20	+0.7
3,527,475	+	hslR	b3400	0.26	+0.8
3,527,475	+	hslR	b3400	0.26	-0.1
3,527,483	-	hslR	b3400	0.28	+0.2
3,527,492	+	hslR	b3400	0.30	+0.4
3,527,530	+	hslR	b3400	0.40	+0.4
3,527,538	-	hslR	b3400	0.42	+0.4
3,527,538	-	hslR	b3400	0.42	+0.6
3,527,538	-	hslR	b3400	0.42	+0.5
3,527,538	-	hslR	b3400	0.42	+0.8
3,527,548	+	hslR	b3400	0.44	-1.3
3,527,556	-	hslR	b3400	0.46	-0.1
3,527,565	+	hslR	b3400	0.49	+0.3
3,527,565	+	hslR	b3400	0.49	-0.1
3,527,589	-	hslR	b3400	0.54	-0.5
3,527,608	-	hslR	b3400	0.59	-0.0