Strain Fitness in Escherichia coli BW25113 around b3133

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,277,261	-	kbaZ	b3132	0.25	-1.2
3,277,338	-	kbaZ	b3132	0.31	-0.9
3,277,338	-	kbaZ	b3132	0.31	-0.2
3,277,393	+	kbaZ	b3132	0.36	+0.7
3,277,393	+	kbaZ	b3132	0.36	-0.0
3,277,419	+	kbaZ	b3132	0.38	+0.3
3,277,443	-	kbaZ	b3132	0.40	+0.1
3,277,443	-	kbaZ	b3132	0.40	+0.6
3,277,477	+	kbaZ	b3132	0.42	+0.7
3,277,602	-	kbaZ	b3132	0.52	+0.1
3,277,603	+	kbaZ	b3132	0.52	-0.4
3,277,603	+	kbaZ	b3132	0.52	-0.5
3,277,647	+	kbaZ	b3132	0.56	+0.2
3,277,647	+	kbaZ	b3132	0.56	+0.5
3,277,780	-	kbaZ	b3132	0.66	+0.1
3,277,831	+	kbaZ	b3132	0.70	+0.2
3,277,868	+	kbaZ	b3132	0.73	+0.2
3,277,868	+	kbaZ	b3132	0.73	+0.1
3,277,873	+	kbaZ	b3132	0.73	+0.2
3,277,873	+	kbaZ	b3132	0.73	+0.4
3,277,873	+	kbaZ	b3132	0.73	+0.2
3,277,883	+	kbaZ	b3132	0.74	-0.3
3,277,900	-	kbaZ	b3132	0.75	+0.2
3,277,927	+	kbaZ	b3132	0.77	+0.2
3,277,974	+	kbaZ	b3132	0.81	+0.9
3,278,065	+	kbaZ	b3132	0.88	-0.1
3,278,172	-				-0.4
3,278,184	+				-0.9
3,278,189	+				+0.0
3,278,189	+				-0.1
3,278,189	+				-0.3
3,278,189	+				+0.5
3,278,197	-				-0.7
3,278,197	-				+1.6
3,278,197	-				-0.3
3,278,197	-				-0.8
3,278,294	+	agaV	b3133	0.12	+0.3
3,278,402	-	agaV	b3133	0.34	-0.5
3,278,407	+	agaV	b3133	0.35	-0.6
3,278,415	+	agaV	b3133	0.37	-0.1
3,278,514	+	agaV	b3133	0.58	-0.5
3,278,554	+	agaV	b3133	0.66	-0.6
3,278,657	+	agaV	b3133	0.88	+2.4
3,278,657	+	agaV	b3133	0.88	+2.4
3,278,675	-				-0.2
3,278,697	+				-0.4
3,278,697	+				-0.5
3,278,795	+	agaW	b3134	0.19	-0.7
3,278,795	+	agaW	b3134	0.19	+0.4
3,278,848	+	agaW	b3134	0.33	-0.3
3,278,880	+	agaW	b3134	0.42	-0.5
3,278,914	-	agaW	b3134	0.51	-0.1
3,278,938	-	agaW	b3134	0.57	+0.6
3,279,056	+	agaW	b3134	0.89	-0.1
3,279,056	+	agaW	b3134	0.89	+0.5
3,279,139	+				-0.1
3,279,139	+				-0.3
3,279,143	+				-0.1
3,279,147	-				+0.0
3,279,147	-				-0.1
3,279,147	-				-0.2
3,279,177	-	agaA	b3135	0.15	+0.4
3,279,177	-	agaA	b3135	0.15	+0.4
3,279,239	-	agaA	b3135	0.26	+1.0
3,279,359	-	agaA	b3135	0.48	-0.1
3,279,365	-	agaA	b3135	0.49	+0.2
3,279,367	-	agaA	b3135	0.49	+1.0
3,279,380	-	agaA	b3135	0.52	+0.4
3,279,452	+	agaA	b3135	0.65	-0.1
3,279,455	+	agaA	b3135	0.65	+0.1
3,279,550	-	agaA	b3135	0.82	-0.9
3,279,550	-	agaA	b3135	0.82	-0.5