Strain Fitness in Escherichia coli BW25113 around b3102

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,248,076	+				-0.2
3,248,140	-	yqjK	b3100	0.14	+0.3
3,248,140	-	yqjK	b3100	0.14	-0.7
3,248,162	+	yqjK	b3100	0.21	-0.1
3,248,281	+	yqjK	b3100	0.61	+0.5
3,248,281	+	yqjK	b3100	0.61	-0.6
3,248,309	-	yqjK	b3100	0.70	+0.0
3,248,309	-	yqjK	b3100	0.70	-0.7
3,248,323	-	yqjK	b3100	0.75	-0.1
3,248,326	+	yqjK	b3100	0.76	+0.6
3,248,384	-				-0.8
3,248,676	+	yqjF	b3101	0.23	+0.3
3,248,790	+	yqjF	b3101	0.52	-1.2
3,248,797	+	yqjF	b3101	0.54	+0.3
3,248,940	+				+0.5
3,248,948	-				-0.7
3,249,159	-	yqjG	b3102	0.11	+1.0
3,249,159	-	yqjG	b3102	0.11	-0.7
3,249,259	-	yqjG	b3102	0.22	-0.8
3,249,267	+	yqjG	b3102	0.22	+0.2
3,249,309	-	yqjG	b3102	0.27	+0.2
3,249,309	-	yqjG	b3102	0.27	+0.6
3,249,335	+	yqjG	b3102	0.29	-0.0
3,249,347	-	yqjG	b3102	0.30	+0.6
3,249,347	-	yqjG	b3102	0.30	+0.8
3,249,420	+	yqjG	b3102	0.38	+0.2
3,249,436	+	yqjG	b3102	0.40	+0.3
3,249,499	-	yqjG	b3102	0.46	+0.6
3,249,684	-	yqjG	b3102	0.65	+1.5
3,249,706	+	yqjG	b3102	0.67	-1.5
3,249,706	+	yqjG	b3102	0.67	+0.9
3,249,799	+	yqjG	b3102	0.76	+1.5
3,249,799	+	yqjG	b3102	0.76	+1.6
3,249,806	-	yqjG	b3102	0.77	-0.1
3,249,806	-	yqjG	b3102	0.77	+0.1
3,249,806	-	yqjG	b3102	0.77	+0.1
3,249,853	-	yqjG	b3102	0.82	+0.2
3,249,901	-	yqjG	b3102	0.87	+0.5
3,250,024	-				-0.6
3,250,071	+				+1.0
3,250,071	+				-0.7
3,250,132	-				-0.1
3,250,132	-				-0.1
3,250,145	+				+0.8
3,250,169	+				-0.6
3,250,169	+				+0.0
3,250,204	+				+0.1
3,250,204	+				-0.2
3,250,204	+				+0.9
3,250,212	-				+0.2
3,250,257	+				+0.1
3,250,269	+				+0.4
3,250,269	+				-0.3
3,250,277	-				-1.9
3,250,277	-				-0.2
3,250,390	-	yhaH	b3103	0.17	-0.5
3,250,390	-	yhaH	b3103	0.17	+0.6
3,250,414	+	yhaH	b3103	0.24	+0.2
3,250,427	-	yhaH	b3103	0.28	-0.0
3,250,533	+	yhaH	b3103	0.57	-0.9
3,250,533	+	yhaH	b3103	0.57	-0.3
3,250,533	+	yhaH	b3103	0.57	+0.3
3,250,533	+	yhaH	b3103	0.57	-0.5
3,250,558	-	yhaH	b3103	0.63	-0.3
3,250,558	-	yhaH	b3103	0.63	-0.6
3,250,564	+	yhaH	b3103	0.65	+0.4
3,250,569	+	yhaH	b3103	0.66	+0.7
3,250,571	+	yhaH	b3103	0.67	-0.3
3,250,571	+	yhaH	b3103	0.67	-0.3
3,250,576	+	yhaH	b3103	0.68	-0.2
3,250,577	-	yhaH	b3103	0.69	-0.0
3,250,578	+	yhaH	b3103	0.69	+0.0
3,250,578	+	yhaH	b3103	0.69	-0.4
3,250,583	+	yhaH	b3103	0.70	-0.1
3,250,623	+	yhaH	b3103	0.81	+0.0
3,250,623	+	yhaH	b3103	0.81	-0.3
3,250,640	+	yhaH	b3103	0.86	-0.1
3,250,640	+	yhaH	b3103	0.86	+0.1
3,250,645	+	yhaH	b3103	0.87	-0.0
3,250,672	+				+0.8
3,250,691	+				-0.4
3,250,712	+				-0.5
3,250,721	+				-0.3
3,250,841	+				+1.5
3,250,936	-				+0.4
3,250,982	-	yhaI	b3104	0.14	+0.7
3,250,982	-	yhaI	b3104	0.14	+0.6
3,250,987	-	yhaI	b3104	0.15	+0.2
3,250,996	-	yhaI	b3104	0.18	-0.2
3,250,996	-	yhaI	b3104	0.18	-0.0
3,251,004	-	yhaI	b3104	0.20	+1.2
3,251,004	-	yhaI	b3104	0.20	+1.5
3,251,006	-	yhaI	b3104	0.20	-0.5
3,251,016	+	yhaI	b3104	0.23	+1.5
3,251,024	-	yhaI	b3104	0.25	+2.5