Strain Fitness in Escherichia coli BW25113 around b2910

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
3,052,716	-	pepP	b2908	0.89	+0.4
3,052,730	-				-0.0
3,052,730	-				-0.5
3,052,766	-				-0.4
3,052,805	-				-2.6
3,052,852	+				-1.6
3,052,875	-				+0.5
3,053,056	-	ygfB	b2909	0.29	-0.1
3,053,058	-	ygfB	b2909	0.29	-0.5
3,053,058	-	ygfB	b2909	0.29	-0.7
3,053,063	+	ygfB	b2909	0.30	-0.0
3,053,107	-	ygfB	b2909	0.38	-0.0
3,053,117	-	ygfB	b2909	0.40	+0.6
3,053,117	-	ygfB	b2909	0.40	+1.1
3,053,123	-	ygfB	b2909	0.41	-0.5
3,053,232	-	ygfB	b2909	0.59	-1.0
3,053,240	+	ygfB	b2909	0.61	-0.3
3,053,263	-	ygfB	b2909	0.65	+0.1
3,053,277	+	ygfB	b2909	0.67	-0.3
3,053,308	-	ygfB	b2909	0.73	+0.0
3,053,308	-	ygfB	b2909	0.73	+0.6
3,053,355	+	ygfB	b2909	0.81	-0.9
3,053,355	+	ygfB	b2909	0.81	-1.4
3,053,359	-	ygfB	b2909	0.81	-0.6
3,053,359	-	ygfB	b2909	0.81	-0.6
3,053,392	+	ygfB	b2909	0.87	-1.0
3,053,424	+				-0.4
3,053,434	+				-0.4
3,053,457	+				-0.5
3,053,457	+				+0.2
3,053,457	+				-0.6
3,053,457	+				-0.2
3,053,591	+				+0.3
3,053,591	+				+0.7
3,053,635	+				-0.1
3,053,635	+				-0.5
3,053,635	+				-0.6
3,053,679	+	zapA	b2910	0.14	+0.7
3,053,722	-	zapA	b2910	0.27	+0.3
3,053,731	+	zapA	b2910	0.29	+0.3
3,053,886	-	zapA	b2910	0.76	+0.2
3,053,886	-	zapA	b2910	0.76	+1.1
3,053,891	+	zapA	b2910	0.78	-0.1
3,053,992	-				-0.5
3,054,147	+	ssrS	b2911	0.78	+0.9
3,054,147	+	ssrS	b2911	0.78	+0.4
3,054,348	+	ygfA	b2912	0.15	-1.1
3,054,388	-	ygfA	b2912	0.23	-2.7
3,054,480	-	ygfA	b2912	0.40	-3.5
3,054,480	-	ygfA	b2912	0.40	-1.0
3,054,524	+	ygfA	b2912	0.48	-3.3
3,054,532	-	ygfA	b2912	0.49	-2.9
3,054,578	+	ygfA	b2912	0.57	-1.6
3,054,696	-	ygfA	b2912	0.79	-2.2
3,054,704	+	ygfA	b2912	0.80	-1.8
3,054,704	+	ygfA	b2912	0.80	-1.7
3,054,711	+	ygfA	b2912	0.82	-2.9
3,054,711	+	ygfA	b2912	0.82	-2.9
3,054,788	-				-1.2
3,054,897	+	rygC	b4446	0.19	+0.4
3,054,946	-				+0.3
3,054,946	-				+0.3