Strain Fitness in Escherichia coli BW25113 around b2300

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
2,416,315	-	yfcC	b2298	0.80	-0.6
2,416,315	-	yfcC	b2298	0.80	+0.1
2,416,355	+	yfcC	b2298	0.82	+0.1
2,416,358	-	yfcC	b2298	0.83	-0.3
2,416,358	-	yfcC	b2298	0.83	-0.4
2,416,420	-	yfcC	b2298	0.87	+0.1
2,416,456	+	yfcC	b2298	0.89	-1.5
2,416,475	+				+0.5
2,416,502	+				-0.4
2,416,507	+				-0.1
2,416,512	+				-0.1
2,416,512	+				-0.2
2,416,516	-				-0.9
2,416,532	-				+0.1
2,416,532	-				+1.1
2,416,552	+				+0.4
2,416,605	+				-0.9
2,416,606	-				+0.1
2,416,609	+				+0.3
2,416,736	+	yfcD	b2299	0.15	+0.1
2,416,811	-	yfcD	b2299	0.29	-0.2
2,416,829	+	yfcD	b2299	0.32	+0.6
2,416,973	+	yfcD	b2299	0.58	+0.1
2,416,977	-	yfcD	b2299	0.59	+0.6
2,416,977	-	yfcD	b2299	0.59	+0.2
2,416,977	-	yfcD	b2299	0.59	-1.2
2,417,064	+	yfcD	b2299	0.75	+0.4
2,417,124	+	yfcD	b2299	0.86	+0.5
2,417,124	+	yfcD	b2299	0.86	-0.3
2,417,162	-				+0.3
2,417,177	+				-0.2
2,417,225	+				+0.1
2,417,235	-				-1.0
2,417,408	+	yfcE	b2300	0.27	+2.3
2,417,730	+	yfcE	b2300	0.85	-0.8
2,417,745	+	yfcE	b2300	0.88	-1.0
2,417,745	+	yfcE	b2300	0.88	-0.4
2,417,753	-	yfcE	b2300	0.90	+1.0
2,417,753	-	yfcE	b2300	0.90	+1.0
2,417,759	-				+0.5
2,417,965	+	yfcF	b2301	0.16	-0.8
2,417,965	+	yfcF	b2301	0.16	+0.2
2,417,970	-	yfcF	b2301	0.17	+0.0
2,417,970	-	yfcF	b2301	0.17	+0.2
2,418,048	-	yfcF	b2301	0.29	+0.3
2,418,133	+	yfcF	b2301	0.42	+0.1
2,418,153	+	yfcF	b2301	0.45	-0.0
2,418,184	-	yfcF	b2301	0.50	+0.5
2,418,247	+	yfcF	b2301	0.60	+0.3
2,418,247	+	yfcF	b2301	0.60	+0.5
2,418,269	+	yfcF	b2301	0.63	-0.5
2,418,269	+	yfcF	b2301	0.63	-0.9
2,418,445	-				-0.0
2,418,572	-				-0.0
2,418,607	-				+0.2
2,418,607	-				+0.1
2,418,607	-				+0.6
2,418,607	-				-0.6
2,418,714	+	yfcG	b2302	0.11	-0.4
2,418,736	+	yfcG	b2302	0.14	-0.1
2,418,739	-	yfcG	b2302	0.15	+0.7
2,418,739	-	yfcG	b2302	0.15	+0.2
2,418,744	-	yfcG	b2302	0.16	+0.2