Strain Fitness in Escherichia coli BW25113 around b1035

Experiment: Ying_AminoAcid20 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 3
1,097,934	-	ycdW	b1033	0.88	+0.2
1,097,941	+	ycdW	b1033	0.89	-0.6
1,098,011	+				-0.5
1,098,107	-				+0.4
1,098,107	-				+0.4
1,098,140	+				-1.2
1,098,174	+				+1.0
1,098,250	+	ycdX	b1034	0.20	+0.3
1,098,274	-	ycdX	b1034	0.23	-1.7
1,098,295	+	ycdX	b1034	0.26	+0.3
1,098,303	-	ycdX	b1034	0.27	+0.4
1,098,304	-	ycdX	b1034	0.27	-0.8
1,098,304	-	ycdX	b1034	0.27	-0.6
1,098,390	-	ycdX	b1034	0.39	+0.0
1,098,390	-	ycdX	b1034	0.39	-0.3
1,098,447	-	ycdX	b1034	0.47	+0.5
1,098,459	+	ycdX	b1034	0.48	-0.1
1,098,465	-	ycdX	b1034	0.49	+1.4
1,098,465	-	ycdX	b1034	0.49	+0.5
1,098,656	-	ycdX	b1034	0.75	+0.6
1,098,800	+				+0.3
1,098,805	+				+0.9
1,098,805	+				+0.8
1,098,810	+				-0.3
1,098,813	-				+1.4
1,098,813	-				-0.2
1,098,826	+				-0.1
1,098,888	-				-0.1
1,098,892	+				+0.1
1,098,924	+	ycdY	b1035	0.11	+0.3
1,098,998	+	ycdY	b1035	0.24	+0.3
1,099,046	+	ycdY	b1035	0.33	+0.2
1,099,106	-	ycdY	b1035	0.44	+1.4
1,099,106	-	ycdY	b1035	0.44	+0.3
1,099,189	+	ycdY	b1035	0.59	+0.1
1,099,270	-	ycdY	b1035	0.73	+0.2
1,099,290	+	ycdY	b1035	0.77	+0.0
1,099,293	-	ycdY	b1035	0.77	+0.6
1,099,293	-	ycdY	b1035	0.77	+0.9
1,099,313	+	ycdY	b1035	0.81	+0.2
1,099,313	+	ycdY	b1035	0.81	+0.3
1,099,355	-	ycdY	b1035	0.89	+0.3
1,099,588	+	ycdZ	b1036	0.14	+0.1
1,099,623	-	ycdZ	b1036	0.21	-0.6
1,099,702	+	ycdZ	b1036	0.37	-0.6
1,099,702	+	ycdZ	b1036	0.37	-0.7
1,099,710	-	ycdZ	b1036	0.39	+0.3
1,099,727	+	ycdZ	b1036	0.42	+0.1
1,099,758	+	ycdZ	b1036	0.49	-0.2
1,099,812	-	ycdZ	b1036	0.60	-0.4
1,099,880	-	ycdZ	b1036	0.73	+0.3
1,099,962	+				-0.3
1,099,987	-				+3.1
1,099,987	-				-1.6
1,100,096	-				+0.3
1,100,152	+				+1.1
1,100,152	+				+0.1
1,100,172	-	csgG	b1037	0.12	+1.0
1,100,172	-	csgG	b1037	0.12	+0.9
1,100,172	-	csgG	b1037	0.12	+0.7
1,100,221	-	csgG	b1037	0.18	+0.8
1,100,223	+	csgG	b1037	0.18	+0.1
1,100,223	+	csgG	b1037	0.18	+1.5
1,100,235	+	csgG	b1037	0.19	+0.8
1,100,249	-	csgG	b1037	0.21	+0.7
1,100,251	-	csgG	b1037	0.21	+1.2
1,100,265	-	csgG	b1037	0.23	+0.5
1,100,363	-	csgG	b1037	0.35	+1.2
1,100,410	-	csgG	b1037	0.40	+0.7
1,100,410	-	csgG	b1037	0.40	+0.8