Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yagH and yagI are separated by 4 nucleotides yagI and argF are separated by 138 nucleotides argF and ykgS are separated by 123 nucleotides ykgS and insB-3 are separated by 15 nucleotides insB-3 and insA-3 overlap by 82 nucleotides
b0271: yagH - CP4-6 prophage; predicted xylosidase/arabinosidase (NCBI), at 286,013 to 287,623
yagH
b0272: yagI - CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI), at 287,628 to 288,386
yagI
b0273: argF - CP4-6 prophage; ornithine carbamoyltransferase 2, chain F (NCBI), at 288,525 to 289,529
argF
b4688: ykgS - no description, at 289,653 to 289,857
ykgS
b0274: insB-3 - CP4-6 prophage; IS1 transposase InsAB' (NCBI), at 289,873 to 290,376
insB-3
b0275: insA-3 - CP4-6 prophage; IS1 repressor protein InsA (NCBI), at 290,295 to 290,570
insA-3
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1 at 287.599 kb on - strand at 287.604 kb on + strand at 287.643 kb on - strand at 287.643 kb on - strand at 287.670 kb on - strand at 287.743 kb on - strand, within yagI at 287.766 kb on + strand, within yagI at 287.782 kb on + strand, within yagI at 287.870 kb on + strand, within yagI at 287.904 kb on + strand, within yagI at 287.914 kb on + strand, within yagI at 287.914 kb on + strand, within yagI at 287.955 kb on + strand, within yagI at 288.049 kb on + strand, within yagI at 288.049 kb on + strand, within yagI at 288.056 kb on - strand, within yagI at 288.056 kb on - strand, within yagI at 288.057 kb on - strand, within yagI at 288.057 kb on - strand, within yagI at 288.103 kb on + strand, within yagI at 288.271 kb on + strand, within yagI at 288.271 kb on + strand, within yagI at 288.274 kb on + strand, within yagI at 288.282 kb on - strand, within yagI at 288.282 kb on - strand, within yagI at 288.308 kb on - strand, within yagI at 288.339 kb on - strand at 288.470 kb on - strand at 288.470 kb on - strand at 288.476 kb on + strand at 288.480 kb on - strand at 288.501 kb on - strand at 288.501 kb on - strand at 288.536 kb on - strand at 288.592 kb on - strand at 288.617 kb on - strand at 288.750 kb on + strand, within argF at 288.750 kb on + strand, within argF at 288.758 kb on - strand, within argF at 288.809 kb on - strand, within argF at 288.820 kb on + strand, within argF at 288.820 kb on + strand, within argF at 289.058 kb on - strand, within argF at 289.099 kb on + strand, within argF at 289.099 kb on - strand, within argF at 289.107 kb on - strand, within argF at 289.107 kb on - strand, within argF at 289.193 kb on + strand, within argF at 289.193 kb on + strand, within argF at 289.207 kb on + strand, within argF at 289.207 kb on + strand, within argF at 289.480 kb on - strand at 289.483 kb on - strand at 289.636 kb on - strand at 289.687 kb on - strand, within ykgS
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 3 remove 287,599 - -0.1 287,604 + -0.2 287,643 - -0.0 287,643 - +0.2 287,670 - +0.6 287,743 - yagI b0272 0.15 -0.7 287,766 + yagI b0272 0.18 -0.0 287,782 + yagI b0272 0.20 +0.2 287,870 + yagI b0272 0.32 -0.3 287,904 + yagI b0272 0.36 +1.2 287,914 + yagI b0272 0.38 -1.3 287,914 + yagI b0272 0.38 -1.3 287,955 + yagI b0272 0.43 -0.0 288,049 + yagI b0272 0.55 -0.0 288,049 + yagI b0272 0.55 +0.5 288,056 - yagI b0272 0.56 +0.9 288,056 - yagI b0272 0.56 +0.3 288,057 - yagI b0272 0.57 -2.0 288,057 - yagI b0272 0.57 +0.0 288,103 + yagI b0272 0.63 +0.5 288,271 + yagI b0272 0.85 -0.2 288,271 + yagI b0272 0.85 +0.6 288,274 + yagI b0272 0.85 +0.2 288,282 - yagI b0272 0.86 -0.4 288,282 - yagI b0272 0.86 +0.2 288,308 - yagI b0272 0.90 +1.1 288,339 - +0.4 288,470 - -0.0 288,470 - +0.5 288,476 + -0.1 288,480 - -0.1 288,501 - -0.7 288,501 - +0.3 288,536 - -0.2 288,592 - -0.3 288,617 - +0.6 288,750 + argF b0273 0.22 -0.4 288,750 + argF b0273 0.22 -0.1 288,758 - argF b0273 0.23 -0.9 288,809 - argF b0273 0.28 -0.2 288,820 + argF b0273 0.29 +0.1 288,820 + argF b0273 0.29 +0.2 289,058 - argF b0273 0.53 +0.5 289,099 + argF b0273 0.57 -0.6 289,099 - argF b0273 0.57 +0.6 289,107 - argF b0273 0.58 -0.5 289,107 - argF b0273 0.58 +0.9 289,193 + argF b0273 0.66 +0.0 289,193 + argF b0273 0.66 +0.5 289,207 + argF b0273 0.68 +0.4 289,207 + argF b0273 0.68 -0.9 289,480 - -0.2 289,483 - +0.7 289,636 - +0.6 289,687 - ykgS b4688 0.17 +0.0
Or see this region's nucleotide sequence