Strain Fitness in Escherichia coli BW25113 around b0160
Experiment: Ying_AminoAcid20 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_AminoAcid20 rep A; time point 3 |
---|---|---|---|---|---|
remove | |||||
178,304 | - | btuF | b0158 | 0.80 | +0.6 |
178,304 | - | btuF | b0158 | 0.80 | -0.3 |
178,333 | + | btuF | b0158 | 0.84 | +0.3 |
178,440 | + | -1.1 | |||
178,440 | + | -1.0 | |||
178,448 | - | -0.2 | |||
178,452 | + | +0.1 | |||
179,187 | + | -0.5 | |||
179,228 | + | +0.1 | |||
179,291 | + | +0.3 | |||
179,378 | + | +0.6 | |||
179,467 | + | dgt | b0160 | 0.15 | -1.0 |
179,470 | - | dgt | b0160 | 0.15 | +0.9 |
179,470 | - | dgt | b0160 | 0.15 | +0.7 |
179,528 | + | dgt | b0160 | 0.19 | -0.3 |
179,528 | + | dgt | b0160 | 0.19 | -0.1 |
179,529 | + | dgt | b0160 | 0.19 | +0.8 |
179,551 | + | dgt | b0160 | 0.21 | +0.7 |
179,572 | + | dgt | b0160 | 0.22 | +0.5 |
179,572 | + | dgt | b0160 | 0.22 | -0.1 |
179,612 | + | dgt | b0160 | 0.25 | +0.1 |
179,680 | + | dgt | b0160 | 0.29 | +0.3 |
179,680 | + | dgt | b0160 | 0.29 | +0.4 |
179,755 | + | dgt | b0160 | 0.34 | -0.1 |
179,755 | + | dgt | b0160 | 0.34 | -0.1 |
179,791 | - | dgt | b0160 | 0.36 | -0.7 |
179,801 | - | dgt | b0160 | 0.37 | +2.5 |
179,802 | + | dgt | b0160 | 0.37 | +0.2 |
179,807 | + | dgt | b0160 | 0.38 | +0.1 |
179,813 | + | dgt | b0160 | 0.38 | +0.5 |
179,813 | + | dgt | b0160 | 0.38 | +0.7 |
179,813 | + | dgt | b0160 | 0.38 | -0.0 |
179,813 | - | dgt | b0160 | 0.38 | +0.5 |
179,821 | - | dgt | b0160 | 0.38 | +1.2 |
179,821 | - | dgt | b0160 | 0.38 | +3.5 |
179,847 | - | dgt | b0160 | 0.40 | +0.8 |
179,847 | - | dgt | b0160 | 0.40 | -1.0 |
179,847 | - | dgt | b0160 | 0.40 | +0.4 |
179,882 | + | dgt | b0160 | 0.42 | +0.3 |
179,882 | + | dgt | b0160 | 0.42 | +1.0 |
179,882 | + | dgt | b0160 | 0.42 | +0.5 |
179,894 | + | dgt | b0160 | 0.43 | +0.6 |
179,902 | + | dgt | b0160 | 0.44 | +0.6 |
179,902 | + | dgt | b0160 | 0.44 | -1.4 |
179,902 | + | dgt | b0160 | 0.44 | +0.3 |
179,902 | + | dgt | b0160 | 0.44 | +0.8 |
179,903 | + | dgt | b0160 | 0.44 | +0.4 |
179,907 | + | dgt | b0160 | 0.44 | +0.4 |
179,910 | - | dgt | b0160 | 0.44 | -0.5 |
179,974 | - | dgt | b0160 | 0.49 | +0.5 |
179,974 | - | dgt | b0160 | 0.49 | -1.0 |
179,976 | + | dgt | b0160 | 0.49 | +0.7 |
179,981 | + | dgt | b0160 | 0.49 | +0.5 |
180,011 | + | dgt | b0160 | 0.51 | +0.1 |
180,011 | + | dgt | b0160 | 0.51 | +0.7 |
180,022 | + | dgt | b0160 | 0.52 | +0.5 |
180,032 | - | dgt | b0160 | 0.52 | -0.6 |
180,044 | + | dgt | b0160 | 0.53 | +0.1 |
180,044 | + | dgt | b0160 | 0.53 | -1.3 |
180,046 | + | dgt | b0160 | 0.53 | +1.4 |
180,046 | + | dgt | b0160 | 0.53 | -0.2 |
180,046 | + | dgt | b0160 | 0.53 | +0.4 |
180,046 | + | dgt | b0160 | 0.53 | +0.8 |
180,046 | + | dgt | b0160 | 0.53 | +1.1 |
180,046 | + | dgt | b0160 | 0.53 | +0.5 |
180,046 | + | dgt | b0160 | 0.53 | +0.4 |
180,046 | + | dgt | b0160 | 0.53 | +0.7 |
180,051 | + | dgt | b0160 | 0.54 | +0.0 |
180,051 | + | dgt | b0160 | 0.54 | +0.4 |
180,052 | - | dgt | b0160 | 0.54 | +1.1 |
180,054 | + | dgt | b0160 | 0.54 | +0.3 |
180,054 | + | dgt | b0160 | 0.54 | +0.6 |
180,054 | - | dgt | b0160 | 0.54 | +0.4 |
180,054 | - | dgt | b0160 | 0.54 | -0.8 |
180,054 | - | dgt | b0160 | 0.54 | +0.8 |
180,054 | - | dgt | b0160 | 0.54 | -0.7 |
180,054 | - | dgt | b0160 | 0.54 | -0.3 |
180,054 | - | dgt | b0160 | 0.54 | +0.4 |
180,059 | - | dgt | b0160 | 0.54 | +1.4 |
180,059 | - | dgt | b0160 | 0.54 | +1.8 |
180,062 | + | dgt | b0160 | 0.54 | -1.2 |
180,063 | + | dgt | b0160 | 0.54 | +0.1 |
180,064 | - | dgt | b0160 | 0.54 | +0.5 |
180,072 | - | dgt | b0160 | 0.55 | +0.5 |
180,072 | - | dgt | b0160 | 0.55 | +0.6 |
180,091 | + | dgt | b0160 | 0.56 | -0.3 |
180,106 | + | dgt | b0160 | 0.57 | +0.3 |
180,114 | - | dgt | b0160 | 0.58 | -0.5 |
180,116 | + | dgt | b0160 | 0.58 | +0.2 |
180,129 | + | dgt | b0160 | 0.59 | +1.0 |
180,134 | - | dgt | b0160 | 0.59 | +1.0 |
180,139 | + | dgt | b0160 | 0.59 | +1.5 |
180,139 | + | dgt | b0160 | 0.59 | +0.1 |
180,139 | + | dgt | b0160 | 0.59 | +0.9 |
180,139 | + | dgt | b0160 | 0.59 | +0.5 |
180,139 | + | dgt | b0160 | 0.59 | +0.2 |
180,139 | + | dgt | b0160 | 0.59 | +0.4 |
180,139 | + | dgt | b0160 | 0.59 | +0.5 |
180,142 | - | dgt | b0160 | 0.60 | +0.9 |
180,165 | - | dgt | b0160 | 0.61 | +0.5 |
180,165 | - | dgt | b0160 | 0.61 | +1.5 |
180,203 | + | dgt | b0160 | 0.64 | +0.7 |
180,204 | + | dgt | b0160 | 0.64 | +0.8 |
180,204 | + | dgt | b0160 | 0.64 | -0.0 |
180,212 | - | dgt | b0160 | 0.64 | -1.9 |
180,224 | - | dgt | b0160 | 0.65 | +3.8 |
180,224 | - | dgt | b0160 | 0.65 | +1.7 |
180,224 | - | dgt | b0160 | 0.65 | -0.2 |
180,259 | + | dgt | b0160 | 0.67 | -0.0 |
180,259 | + | dgt | b0160 | 0.67 | +0.1 |
180,282 | - | dgt | b0160 | 0.69 | -0.1 |
180,294 | + | dgt | b0160 | 0.70 | +0.4 |
180,294 | + | dgt | b0160 | 0.70 | +0.5 |
180,316 | + | dgt | b0160 | 0.71 | +0.2 |
180,316 | + | dgt | b0160 | 0.71 | +1.7 |
180,338 | + | dgt | b0160 | 0.73 | +0.5 |
180,338 | + | dgt | b0160 | 0.73 | +1.1 |
180,346 | - | dgt | b0160 | 0.73 | +0.3 |
180,346 | - | dgt | b0160 | 0.73 | +1.1 |
180,346 | - | dgt | b0160 | 0.73 | -1.8 |
180,346 | - | dgt | b0160 | 0.73 | +0.0 |
180,346 | - | dgt | b0160 | 0.73 | -0.2 |
180,346 | - | dgt | b0160 | 0.73 | -0.2 |
180,347 | - | dgt | b0160 | 0.73 | +0.5 |
180,348 | - | dgt | b0160 | 0.73 | +0.5 |
180,429 | + | dgt | b0160 | 0.79 | -0.0 |
180,429 | + | dgt | b0160 | 0.79 | -0.2 |
180,429 | + | dgt | b0160 | 0.79 | +1.1 |
180,429 | + | dgt | b0160 | 0.79 | -0.3 |
180,430 | + | dgt | b0160 | 0.79 | +0.8 |
180,430 | + | dgt | b0160 | 0.79 | +0.4 |
180,430 | + | dgt | b0160 | 0.79 | +0.9 |
180,430 | + | dgt | b0160 | 0.79 | +0.9 |
180,430 | + | dgt | b0160 | 0.79 | +0.5 |
180,430 | + | dgt | b0160 | 0.79 | -0.1 |
180,430 | + | dgt | b0160 | 0.79 | +0.7 |
180,437 | - | dgt | b0160 | 0.79 | +0.9 |
180,437 | - | dgt | b0160 | 0.79 | +0.3 |
180,437 | - | dgt | b0160 | 0.79 | +1.1 |
180,438 | - | dgt | b0160 | 0.79 | -0.6 |
180,445 | - | dgt | b0160 | 0.80 | +0.6 |
180,445 | - | dgt | b0160 | 0.80 | -0.1 |
180,445 | - | dgt | b0160 | 0.80 | +1.0 |
180,451 | + | dgt | b0160 | 0.80 | +1.3 |
180,451 | + | dgt | b0160 | 0.80 | +0.8 |
180,451 | + | dgt | b0160 | 0.80 | -0.9 |
180,462 | + | dgt | b0160 | 0.81 | +0.2 |
180,485 | + | dgt | b0160 | 0.82 | +0.7 |
180,485 | + | dgt | b0160 | 0.82 | +0.9 |
180,485 | + | dgt | b0160 | 0.82 | +1.8 |
180,485 | + | dgt | b0160 | 0.82 | +0.3 |
180,485 | + | dgt | b0160 | 0.82 | +0.1 |
180,485 | + | dgt | b0160 | 0.82 | +1.0 |
180,485 | + | dgt | b0160 | 0.82 | +1.2 |
180,485 | + | dgt | b0160 | 0.82 | +1.4 |
180,486 | + | dgt | b0160 | 0.82 | +0.5 |
180,492 | - | dgt | b0160 | 0.83 | +0.9 |
180,492 | - | dgt | b0160 | 0.83 | +0.2 |
180,493 | - | dgt | b0160 | 0.83 | +0.7 |
180,493 | - | dgt | b0160 | 0.83 | +0.4 |
180,493 | - | dgt | b0160 | 0.83 | -0.1 |
180,496 | + | dgt | b0160 | 0.83 | +0.5 |
180,496 | + | dgt | b0160 | 0.83 | +0.5 |
180,506 | + | dgt | b0160 | 0.84 | +1.1 |
180,506 | + | dgt | b0160 | 0.84 | +0.6 |
180,510 | + | dgt | b0160 | 0.84 | +0.8 |
180,510 | + | dgt | b0160 | 0.84 | +0.7 |
180,510 | + | dgt | b0160 | 0.84 | +0.7 |
180,514 | - | dgt | b0160 | 0.84 | +1.1 |
180,515 | + | dgt | b0160 | 0.84 | +0.6 |
180,515 | - | dgt | b0160 | 0.84 | +0.1 |
180,516 | + | dgt | b0160 | 0.84 | -0.6 |
180,518 | - | dgt | b0160 | 0.84 | +0.1 |
180,518 | - | dgt | b0160 | 0.84 | +0.5 |
180,520 | + | dgt | b0160 | 0.85 | +0.1 |
180,528 | - | dgt | b0160 | 0.85 | +1.0 |
180,557 | - | dgt | b0160 | 0.87 | -0.3 |
180,557 | - | dgt | b0160 | 0.87 | +1.3 |
180,573 | + | dgt | b0160 | 0.88 | +1.0 |
180,573 | + | dgt | b0160 | 0.88 | -0.1 |
180,575 | - | dgt | b0160 | 0.88 | +0.9 |
180,575 | - | dgt | b0160 | 0.88 | +0.6 |
180,583 | - | dgt | b0160 | 0.89 | +0.2 |
180,583 | - | dgt | b0160 | 0.89 | +0.5 |
180,585 | + | dgt | b0160 | 0.89 | -0.0 |
180,585 | + | dgt | b0160 | 0.89 | -0.4 |
180,585 | + | dgt | b0160 | 0.89 | +0.6 |
180,585 | + | dgt | b0160 | 0.89 | +1.1 |
180,585 | + | dgt | b0160 | 0.89 | -0.1 |
180,585 | + | dgt | b0160 | 0.89 | +0.6 |
180,585 | + | dgt | b0160 | 0.89 | +1.2 |
180,585 | + | -1.0 | |||
180,585 | + | dgt | b0160 | 0.89 | +0.3 |
180,585 | - | dgt | b0160 | 0.89 | +1.0 |
180,586 | + | dgt | b0160 | 0.89 | +0.8 |
180,586 | + | dgt | b0160 | 0.89 | +0.5 |
180,586 | + | dgt | b0160 | 0.89 | +2.3 |
180,590 | + | dgt | b0160 | 0.89 | +1.2 |
180,593 | - | dgt | b0160 | 0.89 | +0.2 |
180,593 | - | dgt | b0160 | 0.89 | +0.6 |
180,593 | - | dgt | b0160 | 0.89 | +0.2 |
180,593 | - | dgt | b0160 | 0.89 | -2.2 |
180,593 | - | dgt | b0160 | 0.89 | -0.2 |
180,593 | - | dgt | b0160 | 0.89 | -0.4 |
180,593 | - | dgt | b0160 | 0.89 | -0.7 |
180,594 | - | dgt | b0160 | 0.89 | +0.4 |
180,594 | - | dgt | b0160 | 0.89 | -0.1 |
180,595 | + | dgt | b0160 | 0.89 | -0.8 |
180,595 | + | dgt | b0160 | 0.89 | +0.4 |
180,595 | + | dgt | b0160 | 0.89 | +0.1 |
180,595 | + | dgt | b0160 | 0.89 | -0.5 |
180,595 | + | dgt | b0160 | 0.89 | +0.8 |
180,595 | + | dgt | b0160 | 0.89 | +0.4 |
180,595 | + | dgt | b0160 | 0.89 | +0.7 |
180,595 | + | dgt | b0160 | 0.89 | +0.6 |
180,595 | + | dgt | b0160 | 0.89 | +0.5 |
180,595 | + | dgt | b0160 | 0.89 | +0.7 |
180,595 | + | dgt | b0160 | 0.89 | +0.3 |
180,595 | + | dgt | b0160 | 0.89 | -0.1 |
180,595 | + | dgt | b0160 | 0.89 | +0.3 |
180,595 | + | dgt | b0160 | 0.89 | +0.7 |
180,595 | + | dgt | b0160 | 0.89 | +0.4 |
180,596 | + | dgt | b0160 | 0.90 | +0.3 |
180,596 | + | dgt | b0160 | 0.90 | +1.0 |
180,596 | + | dgt | b0160 | 0.90 | +0.3 |
180,596 | + | dgt | b0160 | 0.90 | +0.1 |
180,596 | - | dgt | b0160 | 0.90 | -1.0 |
180,597 | + | dgt | b0160 | 0.90 | +0.6 |
180,598 | - | dgt | b0160 | 0.90 | +0.3 |
180,599 | - | dgt | b0160 | 0.90 | +0.1 |
180,600 | + | dgt | b0160 | 0.90 | -0.2 |
180,600 | + | dgt | b0160 | 0.90 | +0.3 |
180,600 | + | dgt | b0160 | 0.90 | +0.2 |
180,600 | + | dgt | b0160 | 0.90 | +0.6 |
180,601 | + | dgt | b0160 | 0.90 | +0.0 |
180,603 | - | -0.2 | |||
180,603 | - | +0.0 | |||
180,603 | - | -0.1 | |||
180,603 | - | -0.2 | |||
180,603 | - | +0.7 | |||
180,603 | - | +1.8 | |||
180,603 | - | +0.2 | |||
180,603 | - | +0.5 | |||
180,603 | - | +2.9 | |||
180,603 | - | +1.2 | |||
180,603 | - | +1.6 | |||
180,603 | - | +0.1 | |||
180,603 | - | +0.3 | |||
180,603 | - | +1.9 | |||
180,603 | - | +1.3 | |||
180,603 | - | +0.4 | |||
180,603 | - | +1.0 | |||
180,603 | - | -0.5 | |||
180,603 | - | -0.5 | |||
180,603 | - | -0.3 | |||
180,603 | - | -0.4 | |||
180,603 | - | +1.3 | |||
180,603 | - | +0.4 | |||
180,604 | - | +0.6 | |||
180,604 | - | +0.5 | |||
180,605 | - | +0.4 | |||
180,605 | - | +1.4 | |||
180,605 | - | +0.1 | |||
180,608 | - | +1.0 | |||
180,608 | - | +1.0 | |||
180,608 | - | +0.6 | |||
180,608 | - | +0.3 | |||
180,611 | + | -0.0 | |||
180,615 | - | +1.5 | |||
180,619 | - | +0.6 | |||
180,620 | - | -0.0 | |||
180,620 | - | -0.1 | |||
180,621 | - | +1.1 | |||
180,623 | - | +0.0 | |||
180,648 | - | +0.1 | |||
180,656 | + | +0.7 | |||
180,672 | - | +1.1 | |||
180,682 | + | +0.1 | |||
180,683 | + | +0.8 | |||
180,683 | + | -0.6 | |||
180,685 | - | +0.4 | |||
180,685 | - | +0.6 | |||
180,685 | - | +0.4 | |||
180,687 | + | +0.2 | |||
180,704 | - | -0.0 | |||
180,705 | + | +1.1 | |||
180,705 | + | +1.0 | |||
180,706 | + | +0.1 | |||
180,706 | + | +0.1 | |||
180,707 | + | +0.5 | |||
180,713 | + | +0.6 | |||
180,714 | - | +0.5 | |||
180,714 | - | +0.4 | |||
180,714 | - | +0.1 | |||
180,719 | + | +0.2 | |||
180,719 | + | +0.3 | |||
180,722 | + | +0.3 | |||
180,722 | + | +0.4 | |||
180,722 | + | +0.9 | |||
180,724 | + | +0.5 | |||
180,724 | + | -0.8 | |||
180,728 | - | +0.3 | |||
180,734 | - | -0.3 | |||
180,734 | - | +0.7 | |||
180,741 | + | -0.1 | |||
180,741 | + | -0.2 | |||
180,741 | + | +0.0 | |||
180,851 | - | +0.2 | |||
180,898 | + | -2.0 | |||
180,905 | - | +0.4 | |||
180,905 | - | -0.7 | |||
180,907 | + | +0.1 | |||
180,907 | + | +0.2 | |||
180,907 | + | -1.0 | |||
180,907 | + | -1.8 | |||
180,907 | + | -0.1 | |||
180,909 | + | -0.0 | |||
180,909 | + | +0.2 | |||
180,909 | + | -0.6 | |||
180,912 | - | +0.8 | |||
180,915 | - | +0.9 | |||
180,915 | - | +0.9 | |||
180,915 | - | -0.5 | |||
180,915 | - | -1.2 | |||
180,915 | - | -2.7 | |||
180,915 | - | -1.2 | |||
180,915 | - | -1.1 | |||
180,915 | - | -1.0 | |||
180,915 | - | -2.7 | |||
180,915 | - | +0.3 | |||
180,915 | - | -2.2 | |||
180,917 | - | -0.7 | |||
180,917 | - | +0.6 | |||
180,917 | - | -0.1 | |||
180,920 | - | +1.5 | |||
180,924 | - | -0.7 | |||
180,925 | - | +1.5 | |||
180,925 | - | -1.0 | |||
180,932 | - | -0.7 | |||
180,932 | - | -1.8 | |||
180,957 | - | -0.4 | |||
180,959 | - | -0.2 | |||
180,962 | + | +0.1 | |||
180,962 | + | +0.9 | |||
180,970 | - | +0.6 | |||
180,970 | - | -0.5 | |||
180,994 | - | +0.7 | |||
180,994 | - | +0.0 | |||
180,994 | - | +1.1 | |||
180,994 | - | -2.7 | |||
180,995 | + | -0.5 | |||
180,997 | + | +0.5 | |||
181,002 | + | -0.6 | |||
181,002 | + | -0.7 | |||
181,002 | + | -0.5 | |||
181,040 | - | degP | b0161 | 0.11 | -0.1 |
181,040 | - | degP | b0161 | 0.11 | +1.3 |
181,040 | - | degP | b0161 | 0.11 | +0.9 |
181,058 | - | degP | b0161 | 0.12 | +0.8 |
181,062 | + | degP | b0161 | 0.12 | +0.3 |
181,068 | + | degP | b0161 | 0.13 | +0.2 |
181,075 | + | degP | b0161 | 0.13 | -2.0 |
181,120 | - | degP | b0161 | 0.17 | -2.2 |
181,120 | - | degP | b0161 | 0.17 | -0.5 |
181,262 | - | degP | b0161 | 0.27 | +0.9 |
181,360 | + | degP | b0161 | 0.33 | -1.5 |
181,383 | - | degP | b0161 | 0.35 | -2.9 |
181,383 | - | degP | b0161 | 0.35 | -1.5 |
181,452 | - | degP | b0161 | 0.40 | -0.5 |
181,552 | - | degP | b0161 | 0.47 | +0.3 |
181,615 | - | degP | b0161 | 0.51 | -1.0 |
181,638 | - | degP | b0161 | 0.53 | -0.1 |
181,638 | - | degP | b0161 | 0.53 | -0.7 |
181,658 | + | degP | b0161 | 0.54 | -1.0 |
181,680 | + | degP | b0161 | 0.56 | -0.0 |
181,688 | - | degP | b0161 | 0.56 | -1.7 |
Or see this region's nucleotide sequence