Strain Fitness in Escherichia coli BW25113 around b4451

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
3,577,990	+	yhhX	b3440	0.19	-0.4
3,578,003	-	yhhX	b3440	0.20	-0.2
3,578,003	-	yhhX	b3440	0.20	+0.1
3,578,005	-	yhhX	b3440	0.21	-0.1
3,578,042	+	yhhX	b3440	0.24	+0.7
3,578,047	+	yhhX	b3440	0.25	+0.4
3,578,047	+	yhhX	b3440	0.25	-0.7
3,578,047	+	yhhX	b3440	0.25	-0.4
3,578,068	-	yhhX	b3440	0.27	+0.4
3,578,078	-	yhhX	b3440	0.28	+0.0
3,578,187	+	yhhX	b3440	0.38	-0.2
3,578,307	+	yhhX	b3440	0.50	-0.3
3,578,307	+	yhhX	b3440	0.50	-0.1
3,578,333	+	yhhX	b3440	0.52	-0.1
3,578,333	+	yhhX	b3440	0.52	-0.2
3,578,533	-	yhhX	b3440	0.71	+0.7
3,578,628	-	yhhX	b3440	0.81	+0.4
3,578,656	-	yhhX	b3440	0.83	-0.1
3,578,761	+				+0.2
3,578,762	+				+0.3
3,578,762	+				-0.9
3,578,766	+				+0.5
3,578,766	+				-0.5
3,578,774	-				+0.2
3,578,778	+				+0.2
3,578,784	-				-0.1
3,578,881	+				+0.7
3,578,885	+				-0.2
3,578,889	-				+1.4
3,578,901	+				+0.3
3,578,974	+	ryhB	b4451	0.27	+0.4
3,578,974	+	ryhB	b4451	0.27	+1.2
3,578,993	+	ryhB	b4451	0.48	+0.6
3,579,141	-				+1.1
3,579,142	+				+0.2
3,579,173	+				-0.2
3,579,173	+				-0.5
3,579,196	+				+0.3
3,579,217	+	yhhY	b3441	0.11	+0.1
3,579,243	-	yhhY	b3441	0.17	+0.9
3,579,243	-	yhhY	b3441	0.17	+0.9
3,579,249	+	yhhY	b3441	0.18	-0.2
3,579,249	+	yhhY	b3441	0.18	+0.6
3,579,259	-	yhhY	b3441	0.20	+0.3
3,579,270	-	yhhY	b3441	0.22	-0.9
3,579,285	-	yhhY	b3441	0.25	-0.2
3,579,330	+	yhhY	b3441	0.35	-0.1
3,579,344	+	yhhY	b3441	0.37	-0.2
3,579,347	-	yhhY	b3441	0.38	-0.2
3,579,347	-	yhhY	b3441	0.38	+0.1
3,579,368	-	yhhY	b3441	0.42	+0.1
3,579,374	-	yhhY	b3441	0.44	-0.4
3,579,376	-	yhhY	b3441	0.44	-0.1
3,579,420	-	yhhY	b3441	0.53	+0.3
3,579,420	-	yhhY	b3441	0.53	+0.7
3,579,422	-	yhhY	b3441	0.53	-0.3
3,579,422	-	yhhY	b3441	0.53	+0.2
3,579,423	+	yhhY	b3441	0.54	+0.0
3,579,450	+	yhhY	b3441	0.59	+0.5
3,579,452	+	yhhY	b3441	0.60	+0.6
3,579,457	+	yhhY	b3441	0.61	-0.1
3,579,470	+	yhhY	b3441	0.63	+0.3
3,579,470	+	yhhY	b3441	0.63	+0.7
3,579,479	+	yhhY	b3441	0.65	-0.9
3,579,479	+	yhhY	b3441	0.65	-0.3
3,579,490	+	yhhY	b3441	0.67	-1.5
3,579,490	+	yhhY	b3441	0.67	-0.1
3,579,490	+	yhhY	b3441	0.67	-0.4
3,579,494	-	yhhY	b3441	0.68	+1.0
3,579,494	-	yhhY	b3441	0.68	-1.4
3,579,495	+	yhhY	b3441	0.68	+0.1
3,579,501	+	yhhY	b3441	0.70	+0.5
3,579,504	+	yhhY	b3441	0.70	-1.9
3,579,504	+	yhhY	b3441	0.70	+0.0
3,579,505	+	yhhY	b3441	0.70	-0.1
3,579,505	+	yhhY	b3441	0.70	-0.0
3,579,505	+	yhhY	b3441	0.70	-0.4
3,579,505	+	yhhY	b3441	0.70	+0.0
3,579,510	+	yhhY	b3441	0.71	-0.3
3,579,514	+	yhhY	b3441	0.72	+0.3
3,579,580	+	yhhY	b3441	0.86	-0.8
3,579,580	+	yhhY	b3441	0.86	-0.1
3,579,581	+	yhhY	b3441	0.86	+0.0
3,579,582	+	yhhY	b3441	0.86	-0.2
3,579,582	+				-0.6
3,579,582	+	yhhY	b3441	0.86	-0.3
3,579,584	+	yhhY	b3441	0.87	-0.4
3,579,584	+	yhhY	b3441	0.87	+0.1
3,579,584	+	yhhY	b3441	0.87	-0.4
3,579,584	+	yhhY	b3441	0.87	+0.4
3,579,584	+	yhhY	b3441	0.87	-0.4
3,579,584	+	yhhY	b3441	0.87	-0.3
3,579,584	+	yhhY	b3441	0.87	-0.0
3,579,589	+	yhhY	b3441	0.88	+0.1
3,579,589	+	yhhY	b3441	0.88	-0.5
3,579,589	+	yhhY	b3441	0.88	+1.1
3,579,591	+	yhhY	b3441	0.88	-0.4
3,579,591	+	yhhY	b3441	0.88	+0.3
3,579,592	+	yhhY	b3441	0.88	-0.1
3,579,592	+	yhhY	b3441	0.88	+0.1
3,579,601	+				-2.6
3,579,606	+				+0.1
3,579,618	+				-0.1
3,579,618	+				+0.3
3,579,625	+				+0.1
3,579,625	+				+0.0
3,579,625	+				+0.3
3,579,625	+				+0.3
3,579,625	+				+0.5
3,579,625	+				-0.2
3,579,625	+				+0.7
3,579,627	+				-0.9
3,579,627	+				-0.5
3,579,630	+				+0.6
3,579,644	+				+0.4
3,579,644	+				-0.3
3,579,644	+				+0.5
3,579,644	+				+0.0
3,579,646	+				+0.2
3,579,673	+				+1.3
3,579,673	+				-1.6
3,579,686	+				+0.0
3,579,896	-				+2.6
3,579,945	-				+2.6