Strain Fitness in Escherichia coli BW25113 around b4353

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
4,585,910	+				-1.1
4,585,938	+				+0.9
4,585,938	+				-1.0
4,585,965	-				+0.7
4,585,965	-				+0.6
4,586,002	-				+0.0
4,586,005	-				+0.0
4,586,010	-				-0.1
4,586,010	-				+0.0
4,586,028	+	yjiA	b4352	0.10	+0.2
4,586,034	+	yjiA	b4352	0.11	-0.7
4,586,052	-	yjiA	b4352	0.13	-0.2
4,586,071	-	yjiA	b4352	0.15	+0.6
4,586,088	-	yjiA	b4352	0.16	-0.2
4,586,110	+	yjiA	b4352	0.19	-2.0
4,586,110	+	yjiA	b4352	0.19	-0.5
4,586,111	+	yjiA	b4352	0.19	+0.2
4,586,113	+	yjiA	b4352	0.19	-0.1
4,586,113	+	yjiA	b4352	0.19	-0.3
4,586,147	-	yjiA	b4352	0.22	-0.2
4,586,159	-	yjiA	b4352	0.24	-0.7
4,586,159	-	yjiA	b4352	0.24	-0.0
4,586,186	-	yjiA	b4352	0.27	-0.2
4,586,255	+	yjiA	b4352	0.34	+0.3
4,586,265	-	yjiA	b4352	0.35	-0.4
4,586,265	-	yjiA	b4352	0.35	+0.1
4,586,296	+	yjiA	b4352	0.38	+0.1
4,586,301	+	yjiA	b4352	0.39	-0.1
4,586,304	-	yjiA	b4352	0.39	-0.7
4,586,304	-	yjiA	b4352	0.39	+0.6
4,586,326	+	yjiA	b4352	0.41	-0.0
4,586,346	-	yjiA	b4352	0.43	-0.8
4,586,346	-	yjiA	b4352	0.43	-0.4
4,586,346	-	yjiA	b4352	0.43	+0.9
4,586,356	-	yjiA	b4352	0.44	+0.1
4,586,356	-	yjiA	b4352	0.44	+0.3
4,586,384	+	yjiA	b4352	0.47	+0.2
4,586,447	+	yjiA	b4352	0.54	+0.0
4,586,458	+	yjiA	b4352	0.55	+0.5
4,586,466	-	yjiA	b4352	0.56	-0.5
4,586,466	-	yjiA	b4352	0.56	+0.4
4,586,472	+	yjiA	b4352	0.56	-0.6
4,586,485	+	yjiA	b4352	0.58	+0.7
4,586,485	+	yjiA	b4352	0.58	+0.1
4,586,515	+	yjiA	b4352	0.61	+0.2
4,586,515	+	yjiA	b4352	0.61	-0.5
4,586,517	+	yjiA	b4352	0.61	+0.9
4,586,517	+	yjiA	b4352	0.61	-0.9
4,586,517	+	yjiA	b4352	0.61	-0.8
4,586,517	+	yjiA	b4352	0.61	+0.5
4,586,517	+	yjiA	b4352	0.61	-2.9
4,586,520	-	yjiA	b4352	0.61	+0.0
4,586,520	-	yjiA	b4352	0.61	+0.1
4,586,548	+	yjiA	b4352	0.64	+0.0
4,586,700	+	yjiA	b4352	0.80	+0.1
4,586,792	+	yjiA	b4352	0.90	+0.0
4,586,819	-				+0.8
4,586,823	+				+0.8
4,586,823	+				-0.9
4,586,823	+				-0.2
4,586,862	+				+0.3
4,586,882	+				-0.6
4,586,891	-				-0.1
4,586,891	-				-0.4
4,586,932	+	yjiX	b4353	0.16	+0.1
4,586,932	+	yjiX	b4353	0.16	+0.2
4,586,943	+	yjiX	b4353	0.22	+0.7
4,586,975	+	yjiX	b4353	0.37	+0.4
4,586,975	+	yjiX	b4353	0.37	+0.4
4,587,002	+	yjiX	b4353	0.50	+0.1
4,587,014	-	yjiX	b4353	0.56	+0.3
4,587,113	+				+0.2
4,587,116	-				-0.6
4,587,116	-				+0.6
4,587,118	+				-0.3
4,587,118	+				-0.6
4,587,139	+				+1.1
4,587,204	+				-0.5
4,587,230	+				+0.6
4,587,236	-				-0.5
4,587,236	-				+0.4
4,587,270	+				-0.0
4,587,273	+				+0.4
4,587,273	+				-0.7
4,587,278	+				+0.0
4,587,278	+				-0.1
4,587,280	-				+0.5
4,587,285	-				-0.1
4,587,285	-				-0.2
4,587,304	+				+0.2
4,587,312	-				-0.7
4,587,312	-				-0.2
4,587,312	-				-0.3
4,587,312	-				+0.2
4,587,317	-				+0.1
4,587,367	+	yjiY	b4354	0.10	-0.3
4,587,375	-	yjiY	b4354	0.10	-0.4
4,587,375	-	yjiY	b4354	0.10	+0.8
4,587,375	-	yjiY	b4354	0.10	-0.2
4,587,375	-	yjiY	b4354	0.10	+0.1
4,587,391	-	yjiY	b4354	0.11	-0.3
4,587,393	+	yjiY	b4354	0.11	+0.1
4,587,393	+	yjiY	b4354	0.11	-0.1
4,587,420	-	yjiY	b4354	0.12	-0.1
4,587,436	-	yjiY	b4354	0.13	+0.6
4,587,448	+	yjiY	b4354	0.14	+0.2
4,587,460	+	yjiY	b4354	0.14	-0.2
4,587,461	+	yjiY	b4354	0.14	+0.5
4,587,476	+	yjiY	b4354	0.15	-0.5
4,587,496	+	yjiY	b4354	0.16	+0.0
4,587,502	+	yjiY	b4354	0.16	-0.1
4,587,510	-	yjiY	b4354	0.17	+0.4
4,587,515	+	yjiY	b4354	0.17	+0.2
4,587,515	+	yjiY	b4354	0.17	-0.2
4,587,515	+	yjiY	b4354	0.17	-0.2
4,587,520	-	yjiY	b4354	0.17	+0.2
4,587,520	-	yjiY	b4354	0.17	+0.3
4,587,520	-	yjiY	b4354	0.17	+0.5
4,587,539	-	yjiY	b4354	0.18	-0.2
4,587,556	+	yjiY	b4354	0.19	-0.0
4,587,559	-	yjiY	b4354	0.19	+1.1
4,587,591	+	yjiY	b4354	0.20	+0.6
4,587,591	+	yjiY	b4354	0.20	+0.1
4,587,611	-	yjiY	b4354	0.21	-0.1
4,587,626	-	yjiY	b4354	0.22	+0.4
4,587,626	-	yjiY	b4354	0.22	+0.5
4,587,637	-	yjiY	b4354	0.23	-0.0
4,587,637	-	yjiY	b4354	0.23	-0.4
4,587,642	+	yjiY	b4354	0.23	+0.5
4,587,642	+	yjiY	b4354	0.23	+0.2
4,587,642	+	yjiY	b4354	0.23	-0.1
4,587,644	+	yjiY	b4354	0.23	+0.2
4,587,644	-	yjiY	b4354	0.23	+0.6
4,587,644	-	yjiY	b4354	0.23	-0.3
4,587,644	-	yjiY	b4354	0.23	+0.6
4,587,662	+	yjiY	b4354	0.24	-0.2
4,587,669	+	yjiY	b4354	0.24	-0.3
4,587,669	+	yjiY	b4354	0.24	+0.1
4,587,675	-	yjiY	b4354	0.24	+0.3
4,587,675	-	yjiY	b4354	0.24	+0.4
4,587,675	-	yjiY	b4354	0.24	-0.1
4,587,677	+	yjiY	b4354	0.24	-0.9
4,587,677	+	yjiY	b4354	0.24	+1.0
4,587,684	+	yjiY	b4354	0.25	+0.4
4,587,684	+	yjiY	b4354	0.25	+0.4
4,587,687	-	yjiY	b4354	0.25	-0.0
4,587,687	-	yjiY	b4354	0.25	-0.2
4,587,752	+	yjiY	b4354	0.28	+0.7
4,587,752	+	yjiY	b4354	0.28	-1.6
4,587,837	-	yjiY	b4354	0.32	-0.4
4,587,837	-	yjiY	b4354	0.32	-0.4
4,587,918	-	yjiY	b4354	0.36	+0.7
4,587,918	-	yjiY	b4354	0.36	-0.0
4,587,920	+	yjiY	b4354	0.36	-0.9
4,587,928	-	yjiY	b4354	0.36	-0.3
4,587,928	-	yjiY	b4354	0.36	-0.5
4,587,928	-	yjiY	b4354	0.36	+0.0
4,587,942	-	yjiY	b4354	0.37	+0.0
4,587,967	+	yjiY	b4354	0.38	+0.2
4,587,977	+	yjiY	b4354	0.38	-0.2
4,587,977	+	yjiY	b4354	0.38	-0.7
4,588,003	+	yjiY	b4354	0.40	-0.2
4,588,034	-	yjiY	b4354	0.41	-0.2
4,588,044	-	yjiY	b4354	0.41	+0.1
4,588,044	-	yjiY	b4354	0.41	+0.1
4,588,047	-	yjiY	b4354	0.42	-0.2
4,588,047	-	yjiY	b4354	0.42	-0.3
4,588,068	+	yjiY	b4354	0.43	+0.5
4,588,068	+	yjiY	b4354	0.43	+0.1
4,588,076	-	yjiY	b4354	0.43	+0.1
4,588,086	-	yjiY	b4354	0.43	+0.7
4,588,086	-	yjiY	b4354	0.43	-0.5
4,588,088	+	yjiY	b4354	0.44	-0.2