Strain Fitness in Escherichia coli BW25113 around b2379

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
2,494,277	-	ddg	b2378	0.66	-0.3
2,494,430	+	ddg	b2378	0.83	-0.1
2,494,446	+	ddg	b2378	0.85	-0.5
2,494,446	+	ddg	b2378	0.85	-0.6
2,494,522	-				-0.1
2,494,524	+				+0.2
2,494,527	+				+0.4
2,494,527	+				+0.1
2,494,527	+				-0.1
2,494,769	+				+0.7
2,494,795	-				+1.2
2,494,815	-				+0.2
2,494,883	+				-0.1
2,494,968	+	ypdK	b4680	0.35	-0.0
2,495,161	-				-0.5
2,495,163	-				-0.3
2,495,163	-				-0.8
2,495,165	+				+0.1
2,495,358	+	yfdZ	b2379	0.23	-1.2
2,495,371	+	yfdZ	b2379	0.24	-0.7
2,495,404	+	yfdZ	b2379	0.26	-1.0
2,495,412	-	yfdZ	b2379	0.27	-0.5
2,495,412	-	yfdZ	b2379	0.27	-0.8
2,495,444	-	yfdZ	b2379	0.29	-1.0
2,495,444	-	yfdZ	b2379	0.29	-0.3
2,495,480	-	yfdZ	b2379	0.32	-1.5
2,495,480	-	yfdZ	b2379	0.32	+0.3
2,495,682	+	yfdZ	b2379	0.49	-0.8
2,495,690	-	yfdZ	b2379	0.49	-0.0
2,495,865	+	yfdZ	b2379	0.63	-0.4
2,496,012	-	yfdZ	b2379	0.75	-0.9
2,496,051	+	yfdZ	b2379	0.78	-0.5
2,496,139	-	yfdZ	b2379	0.86	-0.9
2,496,247	-				-0.3
2,496,247	-				-0.5
2,496,282	-				-0.3
2,496,296	+				+0.0
2,496,348	-				-0.5
2,496,348	-				-0.9
2,496,448	-				+0.1
2,496,570	+				-0.2
2,496,570	+				-0.6
2,496,579	-				+0.3
2,496,655	+				-0.3
2,496,659	+				+0.3
2,496,687	-				-0.2
2,496,780	-				+0.2
2,496,814	-				-0.2
2,496,863	+	ypdA	b2380	0.10	-1.0
2,496,863	+	ypdA	b2380	0.10	+0.3
2,496,954	+	ypdA	b2380	0.15	-0.9
2,497,033	+				+1.3
2,497,033	+	ypdA	b2380	0.20	-1.4
2,497,065	-	ypdA	b2380	0.22	-0.3
2,497,135	-	ypdA	b2380	0.26	+0.6