Strain Fitness in Escherichia coli BW25113 around b2369
Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_all64 rep B; time point 3 |
---|---|---|---|---|---|
remove | |||||
2,480,782 | - | emrK | b2368 | 0.50 | +1.2 |
2,480,787 | + | emrK | b2368 | 0.51 | -0.3 |
2,480,801 | + | emrK | b2368 | 0.52 | -0.4 |
2,480,801 | + | emrK | b2368 | 0.52 | -0.1 |
2,480,843 | + | emrK | b2368 | 0.55 | +1.8 |
2,480,843 | + | emrK | b2368 | 0.55 | +0.4 |
2,480,843 | + | emrK | b2368 | 0.55 | -0.7 |
2,480,843 | + | emrK | b2368 | 0.55 | +0.3 |
2,480,889 | + | emrK | b2368 | 0.59 | +0.6 |
2,480,897 | - | emrK | b2368 | 0.60 | -0.1 |
2,480,990 | - | emrK | b2368 | 0.68 | +2.2 |
2,481,080 | - | emrK | b2368 | 0.76 | +2.2 |
2,481,221 | - | emrK | b2368 | 0.88 | +1.2 |
2,481,434 | - | +0.1 | |||
2,481,444 | - | +0.1 | |||
2,481,444 | - | -0.4 | |||
2,481,450 | - | +0.2 | |||
2,481,450 | - | +0.8 | |||
2,481,463 | - | +0.3 | |||
2,481,472 | - | -0.7 | |||
2,481,485 | - | -1.6 | |||
2,481,485 | - | +0.1 | |||
2,481,515 | - | -0.4 | |||
2,481,515 | - | -0.1 | |||
2,481,515 | - | +0.2 | |||
2,481,517 | - | +1.0 | |||
2,481,521 | - | +1.3 | |||
2,481,521 | - | +2.2 | |||
2,481,647 | + | +0.9 | |||
2,481,647 | + | +0.1 | |||
2,481,650 | + | -0.0 | |||
2,481,650 | + | -0.0 | |||
2,481,666 | + | +0.0 | |||
2,481,718 | + | +2.4 | |||
2,481,718 | + | -0.4 | |||
2,481,725 | + | +0.6 | |||
2,481,726 | + | +1.2 | |||
2,481,728 | + | +1.2 | |||
2,481,734 | + | +0.6 | |||
2,481,734 | + | -0.2 | |||
2,481,742 | - | +2.2 | |||
2,481,869 | + | evgA | b2369 | 0.15 | +0.2 |
2,481,886 | + | evgA | b2369 | 0.18 | +3.8 |
2,481,888 | + | evgA | b2369 | 0.18 | +0.2 |
2,481,896 | + | evgA | b2369 | 0.19 | +1.6 |
2,481,896 | + | evgA | b2369 | 0.19 | -0.1 |
2,481,905 | + | evgA | b2369 | 0.21 | +1.4 |
2,481,942 | + | evgA | b2369 | 0.27 | -0.6 |
2,481,946 | + | evgA | b2369 | 0.27 | -0.2 |
2,481,946 | + | evgA | b2369 | 0.27 | +0.1 |
2,481,946 | + | evgA | b2369 | 0.27 | +1.3 |
2,481,955 | + | evgA | b2369 | 0.29 | +1.9 |
2,481,955 | + | evgA | b2369 | 0.29 | -0.6 |
2,481,957 | + | evgA | b2369 | 0.29 | +0.3 |
2,481,973 | + | evgA | b2369 | 0.32 | +0.1 |
2,481,984 | + | evgA | b2369 | 0.34 | +0.7 |
2,481,984 | + | evgA | b2369 | 0.34 | +1.9 |
2,482,043 | + | evgA | b2369 | 0.43 | -1.0 |
2,482,043 | + | evgA | b2369 | 0.43 | -0.4 |
2,482,044 | + | evgA | b2369 | 0.43 | +0.6 |
2,482,045 | + | evgA | b2369 | 0.44 | +1.7 |
2,482,136 | + | evgA | b2369 | 0.58 | +2.2 |
2,482,138 | + | evgA | b2369 | 0.59 | +0.2 |
2,482,149 | + | evgA | b2369 | 0.60 | +2.2 |
2,482,156 | - | evgA | b2369 | 0.62 | +2.2 |
2,482,227 | + | evgA | b2369 | 0.73 | +2.5 |
2,482,235 | + | evgA | b2369 | 0.74 | +1.2 |
2,482,235 | + | evgA | b2369 | 0.74 | +2.2 |
2,482,235 | + | evgA | b2369 | 0.74 | +2.2 |
2,482,308 | + | evgA | b2369 | 0.86 | -0.1 |
2,482,355 | + | +2.2 | |||
2,482,433 | + | +0.6 | |||
2,482,433 | + | +0.2 | |||
2,482,464 | + | +0.2 | |||
2,482,473 | - | +2.2 | |||
2,482,488 | + | +1.2 | |||
2,482,497 | + | +0.2 | |||
2,482,502 | + | -0.1 | |||
2,482,502 | + | -0.6 | |||
2,482,503 | + | +4.5 | |||
2,482,503 | + | -0.1 | |||
2,482,503 | + | -0.1 | |||
2,482,503 | + | -1.8 | |||
2,482,507 | + | -2.3 | |||
2,482,508 | + | +0.2 | |||
2,482,508 | + | +1.2 | |||
2,482,514 | + | +0.8 | |||
2,482,517 | + | +0.2 | |||
2,482,517 | + | +0.6 | |||
2,482,579 | + | -0.4 | |||
2,482,579 | + | +1.2 | |||
2,482,586 | + | +1.8 | |||
2,482,586 | + | +0.0 | |||
2,482,597 | + | -1.4 | |||
2,482,597 | + | +2.2 | |||
2,482,600 | + | +1.2 | |||
2,482,603 | + | +1.0 | |||
2,482,605 | + | -1.0 | |||
2,482,605 | + | +0.5 | |||
2,482,605 | + | -1.3 | |||
2,482,605 | + | -1.1 | |||
2,482,605 | + | -0.8 | |||
2,482,605 | + | -1.9 | |||
2,482,605 | + | -1.5 | |||
2,482,605 | + | -0.6 | |||
2,482,605 | + | +0.6 | |||
2,482,605 | + | +0.2 | |||
2,482,616 | + | -0.6 | |||
2,482,629 | + | -0.3 | |||
2,482,740 | + | +2.2 |
Or see this region's nucleotide sequence