Strain Fitness in Escherichia coli BW25113 around b1948
Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_all64 rep B; time point 3 |
---|---|---|---|---|---|
remove | |||||
2,019,025 | + | +0.1 | |||
2,019,106 | + | +0.2 | |||
2,019,397 | + | fliN | b1946 | 0.69 | +0.2 |
2,019,437 | + | fliN | b1946 | 0.79 | +0.7 |
2,019,538 | + | +0.6 | |||
2,019,538 | + | +0.8 | |||
2,019,995 | + | fliP | b1948 | 0.14 | +0.2 |
2,020,000 | + | fliP | b1948 | 0.14 | +0.4 |
2,020,231 | - | fliP | b1948 | 0.46 | +0.0 |
2,020,359 | - | fliP | b1948 | 0.63 | +0.0 |
2,020,359 | - | fliP | b1948 | 0.63 | +0.0 |
2,020,375 | + | fliP | b1948 | 0.65 | +0.5 |
2,020,382 | - | fliP | b1948 | 0.66 | +0.6 |
2,020,668 | + | fliQ | b1949 | 0.10 | +0.8 |
2,020,719 | - | fliQ | b1949 | 0.29 | +0.4 |
2,020,840 | + | fliQ | b1949 | 0.74 | -0.1 |
2,020,894 | + | -0.2 | |||
2,020,899 | - | +0.3 | |||
2,020,950 | - | +0.7 | |||
2,021,298 | + | fliR | b1950 | 0.48 | +0.0 |
2,021,377 | + | fliR | b1950 | 0.59 | +1.2 |
2,021,377 | + | fliR | b1950 | 0.59 | -0.6 |
2,021,413 | - | fliR | b1950 | 0.63 | +0.5 |
2,021,498 | + | fliR | b1950 | 0.74 | -0.5 |
2,021,501 | + | fliR | b1950 | 0.74 | +0.5 |
2,021,501 | + | fliR | b1950 | 0.74 | +0.6 |
2,021,522 | - | fliR | b1950 | 0.77 | +2.0 |
2,021,572 | + | fliR | b1950 | 0.83 | +0.5 |
2,021,594 | + | fliR | b1950 | 0.86 | -0.5 |
2,021,594 | + | fliR | b1950 | 0.86 | +0.0 |
2,021,595 | + | fliR | b1950 | 0.86 | -1.1 |
2,021,595 | + | fliR | b1950 | 0.86 | +0.2 |
Or see this region's nucleotide sequence