Strain Fitness in Escherichia coli BW25113 around b1619

Experiment: Ying_all64 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 3
1,694,629	+				+0.1
1,694,629	+	uidR	b1618	0.24	+0.5
1,694,746	-	uidR	b1618	0.44	-0.1
1,694,873	+	uidR	b1618	0.65	+0.5
1,694,873	+	uidR	b1618	0.65	-0.2
1,694,938	+	uidR	b1618	0.76	-0.2
1,695,083	+				+0.0
1,695,089	-				-0.1
1,695,234	-				+0.2
1,695,316	-				-0.1
1,695,368	+				-0.3
1,695,368	+				-0.0
1,695,393	-	hdhA	b1619	0.12	-0.4
1,695,425	+	hdhA	b1619	0.17	+0.4
1,695,432	-	hdhA	b1619	0.18	+1.0
1,695,432	-	hdhA	b1619	0.18	+0.7
1,695,558	-	hdhA	b1619	0.34	-0.3
1,695,574	+	hdhA	b1619	0.36	+1.8
1,695,574	+	hdhA	b1619	0.36	-0.2
1,695,574	+	hdhA	b1619	0.36	+0.4
1,695,582	-	hdhA	b1619	0.37	+0.4
1,695,582	-	hdhA	b1619	0.37	+0.6
1,695,592	-	hdhA	b1619	0.38	+0.4
1,695,592	-	hdhA	b1619	0.38	-0.2
1,695,690	-	hdhA	b1619	0.51	+0.9
1,695,690	-	hdhA	b1619	0.51	+0.2
1,695,724	-	hdhA	b1619	0.56	-0.7
1,695,758	-	hdhA	b1619	0.60	-0.0
1,695,771	-	hdhA	b1619	0.62	-1.1
1,695,771	-	hdhA	b1619	0.62	+0.2
1,695,779	-	hdhA	b1619	0.63	+0.7
1,695,779	-	hdhA	b1619	0.63	-0.0
1,695,841	-	hdhA	b1619	0.71	+0.2
1,695,841	-	hdhA	b1619	0.71	-1.0
1,695,901	-	hdhA	b1619	0.79	+0.8
1,695,914	-	hdhA	b1619	0.80	+1.0
1,695,925	-	hdhA	b1619	0.82	+1.8
1,695,959	+	hdhA	b1619	0.86	+0.6
1,695,959	+	hdhA	b1619	0.86	+1.9
1,696,001	-				+0.7
1,696,125	-				-0.3
1,696,125	-				+0.3
1,696,151	-				-0.4
1,696,154	+				-0.1
1,696,154	+				+1.6
1,696,154	+				-1.2
1,696,161	-				-0.6
1,696,161	-				+0.0
1,696,163	-				+0.2
1,696,163	-				+0.0
1,696,176	+				-2.5
1,696,176	+				+0.5
1,696,181	-				+0.4
1,696,181	-				-0.8
1,696,314	+	malI	b1620	0.13	+0.1
1,696,330	-	malI	b1620	0.15	-0.9
1,696,599	-	malI	b1620	0.41	+0.1
1,696,617	+	malI	b1620	0.43	+0.7
1,696,643	+	malI	b1620	0.45	-0.2