Experiment: Ying_all64 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdlB and glnK are separated by 180 nucleotides glnK and amtB are separated by 29 nucleotides
b0449: mdlB - fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 469,860 to 471,641
mdlB
b0450: glnK - nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI), at 471,822 to 472,160
glnK
b0451: amtB - ammonium transporter (NCBI), at 472,190 to 473,476
amtB
Position (kb) 471
472
473 Strain fitness (log2 ratio) -1
0
1
2 at 470.838 kb on + strand, within mdlB at 470.838 kb on + strand, within mdlB at 471.033 kb on - strand, within mdlB at 471.033 kb on - strand, within mdlB at 471.076 kb on - strand, within mdlB at 471.076 kb on - strand, within mdlB at 471.119 kb on - strand, within mdlB at 471.119 kb on - strand, within mdlB at 471.135 kb on + strand, within mdlB at 471.224 kb on + strand, within mdlB at 471.410 kb on - strand, within mdlB at 471.433 kb on + strand, within mdlB at 471.443 kb on + strand, within mdlB at 471.447 kb on - strand, within mdlB at 471.510 kb on - strand at 471.522 kb on - strand at 471.549 kb on + strand at 471.551 kb on + strand at 471.551 kb on + strand at 471.679 kb on + strand at 471.692 kb on - strand at 471.699 kb on - strand at 471.866 kb on + strand, within glnK at 471.866 kb on + strand, within glnK at 471.884 kb on - strand, within glnK at 472.069 kb on - strand, within glnK at 472.140 kb on + strand at 472.180 kb on - strand at 472.254 kb on - strand at 472.257 kb on + strand at 472.345 kb on + strand, within amtB at 472.345 kb on + strand, within amtB at 472.415 kb on - strand, within amtB at 472.417 kb on + strand, within amtB at 472.430 kb on - strand, within amtB at 472.444 kb on - strand, within amtB at 472.546 kb on + strand, within amtB at 472.669 kb on + strand, within amtB at 472.727 kb on + strand, within amtB at 472.751 kb on + strand, within amtB at 472.828 kb on + strand, within amtB at 472.876 kb on + strand, within amtB at 472.876 kb on + strand, within amtB at 473.140 kb on + strand, within amtB
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep B; time point 3 remove 470,838 + mdlB b0449 0.55 -0.2 470,838 + mdlB b0449 0.55 +0.3 471,033 - mdlB b0449 0.66 -0.4 471,033 - mdlB b0449 0.66 -0.7 471,076 - mdlB b0449 0.68 +0.8 471,076 - mdlB b0449 0.68 +0.6 471,119 - mdlB b0449 0.71 +0.8 471,119 - mdlB b0449 0.71 +0.3 471,135 + mdlB b0449 0.72 -0.2 471,224 + mdlB b0449 0.77 -0.4 471,410 - mdlB b0449 0.87 +0.1 471,433 + mdlB b0449 0.88 -0.6 471,443 + mdlB b0449 0.89 -0.3 471,447 - mdlB b0449 0.89 +0.2 471,510 - +0.4 471,522 - +0.3 471,549 + -0.3 471,551 + +1.2 471,551 + +0.2 471,679 + -0.4 471,692 - +0.0 471,699 - +0.5 471,866 + glnK b0450 0.13 -0.0 471,866 + glnK b0450 0.13 +0.2 471,884 - glnK b0450 0.18 +0.7 472,069 - glnK b0450 0.73 +0.4 472,140 + -0.0 472,180 - +0.9 472,254 - +0.3 472,257 + +0.7 472,345 + amtB b0451 0.12 -0.1 472,345 + amtB b0451 0.12 -0.0 472,415 - amtB b0451 0.17 +0.0 472,417 + amtB b0451 0.18 -0.2 472,430 - amtB b0451 0.19 +0.5 472,444 - amtB b0451 0.20 +2.3 472,546 + amtB b0451 0.28 -0.2 472,669 + amtB b0451 0.37 +0.6 472,727 + amtB b0451 0.42 +0.2 472,751 + amtB b0451 0.44 -0.1 472,828 + amtB b0451 0.50 +0.0 472,876 + amtB b0451 0.53 -0.1 472,876 + amtB b0451 0.53 -0.5 473,140 + amtB b0451 0.74 +0.4
Or see this region's nucleotide sequence