Strain Fitness in Escherichia coli BW25113 around b4660

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
3,630,560	-				+2.4
3,630,580	+				-0.4
3,630,583	+				+2.4
3,630,583	+				+0.8
3,630,880	-				+0.8
3,630,880	-				+1.4
3,630,966	-				+2.4
3,630,966	-				+0.8
3,630,990	-				+0.4
3,631,001	-				-0.8
3,631,001	-				+0.8
3,631,066	-	yhiL	b4660	0.12	+2.4
3,631,068	-	yhiL	b4660	0.12	+2.4
3,631,068	-	yhiL	b4660	0.12	+1.8
3,631,134	-	yhiL	b4660	0.16	+2.4
3,632,110	-	yhiL	b4660	0.77	+2.4
3,632,725	+				+2.4
3,632,756	+				+3.7
3,632,757	+				+2.4
3,632,768	-				+2.4
3,632,850	-				+0.2
3,632,909	-				+0.6
3,632,909	-				+0.6
3,632,910	-				-1.2
3,632,925	-				+1.4
3,632,937	+				+2.4
3,632,950	-				+2.1
3,632,950	-				+0.0
3,632,960	-				+1.4
3,632,960	-				+0.0
3,632,971	+	yhiM	b3491	0.10	+1.4
3,632,976	-	yhiM	b3491	0.11	+0.8
3,632,997	+	yhiM	b3491	0.13	+0.6
3,632,997	+	yhiM	b3491	0.13	+3.4
3,632,997	+	yhiM	b3491	0.13	+2.4
3,633,002	-	yhiM	b3491	0.13	+3.1
3,633,005	+	yhiM	b3491	0.13	-1.1
3,633,005	+	yhiM	b3491	0.13	+0.1
3,633,006	+	yhiM	b3491	0.13	+1.4
3,633,007	+	yhiM	b3491	0.14	-0.1
3,633,013	-	yhiM	b3491	0.14	+0.4
3,633,013	-	yhiM	b3491	0.14	+1.4
3,633,013	-	yhiM	b3491	0.14	+0.3
3,633,014	-	yhiM	b3491	0.14	+1.0
3,633,014	-	yhiM	b3491	0.14	-0.2
3,633,017	+	yhiM	b3491	0.15	+4.4
3,633,017	+	yhiM	b3491	0.15	+0.8
3,633,052	+	yhiM	b3491	0.18	-1.5
3,633,060	-	yhiM	b3491	0.19	+0.4
3,633,071	-	yhiM	b3491	0.20	+1.1
3,633,071	-	yhiM	b3491	0.20	+2.8
3,633,071	-	yhiM	b3491	0.20	-0.4
3,633,081	-	yhiM	b3491	0.21	-0.6
3,633,086	+	yhiM	b3491	0.21	+0.0
3,633,089	-	yhiM	b3491	0.21	-1.0
3,633,089	-	yhiM	b3491	0.21	+0.5
3,633,109	-	yhiM	b3491	0.23	+0.7
3,633,117	+	yhiM	b3491	0.24	+1.4
3,633,124	-	yhiM	b3491	0.25	+0.1
3,633,127	+	yhiM	b3491	0.25	+1.4
3,633,127	+	yhiM	b3491	0.25	+0.2
3,633,128	+	yhiM	b3491	0.25	-0.2
3,633,128	+	yhiM	b3491	0.25	-0.1
3,633,128	+	yhiM	b3491	0.25	+1.4
3,633,135	+	yhiM	b3491	0.26	-0.4
3,633,135	-	yhiM	b3491	0.26	+0.2
3,633,135	-	yhiM	b3491	0.26	+0.3
3,633,135	-	yhiM	b3491	0.26	+0.2
3,633,135	-	yhiM	b3491	0.26	+0.1
3,633,136	-	yhiM	b3491	0.26	+0.7
3,633,136	-	yhiM	b3491	0.26	+0.4
3,633,136	-	yhiM	b3491	0.26	-0.4
3,633,136	-	yhiM	b3491	0.26	+0.8
3,633,136	-	yhiM	b3491	0.26	-0.5
3,633,136	-	yhiM	b3491	0.26	+0.5
3,633,136	-	yhiM	b3491	0.26	+0.6
3,633,136	-	yhiM	b3491	0.26	+0.5
3,633,136	-	yhiM	b3491	0.26	+0.8
3,633,136	-	yhiM	b3491	0.26	+0.5
3,633,138	+	yhiM	b3491	0.26	-1.1
3,633,141	-	yhiM	b3491	0.26	+0.3
3,633,141	-	yhiM	b3491	0.26	-0.5
3,633,141	-	yhiM	b3491	0.26	+1.1
3,633,143	+	yhiM	b3491	0.26	+0.0
3,633,143	+	yhiM	b3491	0.26	+1.2
3,633,143	-	yhiM	b3491	0.26	+0.2
3,633,143	-	yhiM	b3491	0.26	+0.8
3,633,146	-	yhiM	b3491	0.27	-0.1
3,633,147	-	yhiM	b3491	0.27	-0.1
3,633,147	-	yhiM	b3491	0.27	+0.6
3,633,148	-	yhiM	b3491	0.27	+0.3
3,633,150	-	yhiM	b3491	0.27	+0.4
3,633,151	-	yhiM	b3491	0.27	+0.8
3,633,151	-	yhiM	b3491	0.27	+1.4
3,633,151	-	yhiM	b3491	0.27	-1.0
3,633,151	-	yhiM	b3491	0.27	-0.2
3,633,152	+	yhiM	b3491	0.27	+2.4
3,633,153	-	yhiM	b3491	0.27	+1.6
3,633,154	+	yhiM	b3491	0.28	+0.5
3,633,154	-	yhiM	b3491	0.28	-0.1
3,633,162	-	yhiM	b3491	0.28	-0.0
3,633,164	-	yhiM	b3491	0.28	-0.5
3,633,165	-	yhiM	b3491	0.29	+0.9
3,633,165	-	yhiM	b3491	0.29	+0.5
3,633,166	-	yhiM	b3491	0.29	+0.6
3,633,175	-	yhiM	b3491	0.30	-0.5
3,633,214	-	yhiM	b3491	0.33	+0.5
3,633,214	-	yhiM	b3491	0.33	+0.2
3,633,216	+	yhiM	b3491	0.33	+1.4
3,633,220	-	yhiM	b3491	0.34	-0.3
3,633,222	+	yhiM	b3491	0.34	+0.0
3,633,224	+	yhiM	b3491	0.34	+0.1
3,633,224	+	yhiM	b3491	0.34	-0.1
3,633,229	+	yhiM	b3491	0.35	+0.2
3,633,229	+	yhiM	b3491	0.35	-0.1
3,633,230	-	yhiM	b3491	0.35	-0.0
3,633,232	-	yhiM	b3491	0.35	-0.4
3,633,232	-	yhiM	b3491	0.35	+0.5
3,633,233	+	yhiM	b3491	0.35	+0.4
3,633,240	+	yhiM	b3491	0.36	+0.0
3,633,249	-	yhiM	b3491	0.37	-0.2
3,633,253	+	yhiM	b3491	0.37	+0.1
3,633,263	+	yhiM	b3491	0.38	-0.9
3,633,271	+	yhiM	b3491	0.39	+0.3
3,633,283	+	yhiM	b3491	0.40	-0.1
3,633,283	+	yhiM	b3491	0.40	-0.0
3,633,283	+	yhiM	b3491	0.40	+0.3
3,633,283	+	yhiM	b3491	0.40	+0.4
3,633,291	-	yhiM	b3491	0.41	+0.2
3,633,291	-	yhiM	b3491	0.41	+0.0
3,633,291	-	yhiM	b3491	0.41	-0.0
3,633,291	-	yhiM	b3491	0.41	-0.6
3,633,291	-	yhiM	b3491	0.41	+1.0
3,633,294	+	yhiM	b3491	0.41	-0.4
3,633,294	+	yhiM	b3491	0.41	-0.7
3,633,294	+	yhiM	b3491	0.41	-0.6
3,633,294	+	yhiM	b3491	0.41	+0.3
3,633,300	+	yhiM	b3491	0.41	+0.4
3,633,300	+	yhiM	b3491	0.41	-0.1
3,633,300	+	yhiM	b3491	0.41	+0.5
3,633,300	+	yhiM	b3491	0.41	-0.2
3,633,302	+	yhiM	b3491	0.42	-0.2
3,633,303	-	yhiM	b3491	0.42	-0.2
3,633,303	-	yhiM	b3491	0.42	+0.7
3,633,308	-	yhiM	b3491	0.42	+0.3
3,633,308	-	yhiM	b3491	0.42	-0.1
3,633,310	+	yhiM	b3491	0.42	-0.2
3,633,310	+	yhiM	b3491	0.42	+0.2
3,633,310	+	yhiM	b3491	0.42	+0.1
3,633,313	-	yhiM	b3491	0.43	-0.9
3,633,313	-	yhiM	b3491	0.43	-0.0
3,633,313	-	yhiM	b3491	0.43	+0.2
3,633,313	-	yhiM	b3491	0.43	+0.6
3,633,316	+	yhiM	b3491	0.43	-0.1
3,633,316	+	yhiM	b3491	0.43	-0.5
3,633,318	-	yhiM	b3491	0.43	+0.4
3,633,318	-	yhiM	b3491	0.43	+0.0
3,633,318	-	yhiM	b3491	0.43	-0.7
3,633,320	+	yhiM	b3491	0.43	+0.8
3,633,329	+	yhiM	b3491	0.44	-0.2
3,633,337	+	yhiM	b3491	0.45	-0.4
3,633,339	+	yhiM	b3491	0.45	-1.3
3,633,339	+	yhiM	b3491	0.45	-0.5
3,633,345	-	yhiM	b3491	0.46	-0.3
3,633,352	+	yhiM	b3491	0.46	+0.1
3,633,353	+	yhiM	b3491	0.46	+0.7
3,633,353	+	yhiM	b3491	0.46	-0.0
3,633,357	+	yhiM	b3491	0.47	-0.6
3,633,357	+	yhiM	b3491	0.47	+0.5
3,633,357	+	yhiM	b3491	0.47	-0.8
3,633,357	+	yhiM	b3491	0.47	+0.7
3,633,364	-	yhiM	b3491	0.47	+1.3
3,633,364	-	yhiM	b3491	0.47	+0.5
3,633,367	+	yhiM	b3491	0.48	+0.3
3,633,376	+	yhiM	b3491	0.49	-0.2
3,633,382	+	yhiM	b3491	0.49	-0.7
3,633,384	+	yhiM	b3491	0.49	+0.2
3,633,386	+	yhiM	b3491	0.50	+0.5
3,633,386	+	yhiM	b3491	0.50	+0.5
3,633,386	+	yhiM	b3491	0.50	+0.4
3,633,390	+	yhiM	b3491	0.50	+0.2
3,633,390	+	yhiM	b3491	0.50	-0.0
3,633,392	+	yhiM	b3491	0.50	-0.4
3,633,392	+	yhiM	b3491	0.50	-1.3
3,633,392	+	yhiM	b3491	0.50	+0.1
3,633,392	-	yhiM	b3491	0.50	+0.3
3,633,394	+	yhiM	b3491	0.50	-0.7
3,633,394	+	yhiM	b3491	0.50	-0.3
3,633,394	+	yhiM	b3491	0.50	-0.3
3,633,394	+	yhiM	b3491	0.50	+0.0
3,633,394	+	yhiM	b3491	0.50	+0.5
3,633,394	+	yhiM	b3491	0.50	-0.1
3,633,394	-	yhiM	b3491	0.50	-0.4
3,633,394	-	yhiM	b3491	0.50	+1.0
3,633,397	+	yhiM	b3491	0.51	+0.3
3,633,397	+	yhiM	b3491	0.51	+0.9
3,633,397	+	yhiM	b3491	0.51	+0.1
3,633,400	-	yhiM	b3491	0.51	+0.1
3,633,402	+	yhiM	b3491	0.51	-0.1
3,633,402	-	yhiM	b3491	0.51	+0.2
3,633,402	-	yhiM	b3491	0.51	+0.2
3,633,402	-	yhiM	b3491	0.51	+0.3
3,633,402	-	yhiM	b3491	0.51	+0.1
3,633,402	-	yhiM	b3491	0.51	+0.5
3,633,402	-	yhiM	b3491	0.51	+0.3
3,633,405	-	yhiM	b3491	0.51	+1.2
3,633,405	-	yhiM	b3491	0.51	+0.1
3,633,408	+	yhiM	b3491	0.52	-0.2
3,633,410	-	yhiM	b3491	0.52	+0.1
3,633,413	+	yhiM	b3491	0.52	+0.4
3,633,416	-	yhiM	b3491	0.52	+0.6
3,633,416	-	yhiM	b3491	0.52	+0.2
3,633,416	-	yhiM	b3491	0.52	+0.2
3,633,418	+	yhiM	b3491	0.53	+0.1
3,633,418	+	yhiM	b3491	0.53	+0.1
3,633,418	+	yhiM	b3491	0.53	+0.2
3,633,418	+	yhiM	b3491	0.53	+0.2
3,633,418	+	yhiM	b3491	0.53	-0.6
3,633,418	+	yhiM	b3491	0.53	+0.3
3,633,421	+	yhiM	b3491	0.53	-0.7
3,633,421	+	yhiM	b3491	0.53	+0.2
3,633,421	+	yhiM	b3491	0.53	-0.7
3,633,421	+	yhiM	b3491	0.53	-0.6
3,633,426	-	yhiM	b3491	0.53	-0.4
3,633,426	-	yhiM	b3491	0.53	-0.3
3,633,431	+	yhiM	b3491	0.54	-0.8
3,633,431	+	yhiM	b3491	0.54	+0.1
3,633,432	+	yhiM	b3491	0.54	+0.1
3,633,432	+	yhiM	b3491	0.54	+0.6
3,633,436	+	yhiM	b3491	0.54	+0.1
3,633,436	+	yhiM	b3491	0.54	+0.0
3,633,440	+	yhiM	b3491	0.55	-0.5
3,633,440	-	yhiM	b3491	0.55	-0.9
3,633,440	-	yhiM	b3491	0.55	-0.3
3,633,447	+	yhiM	b3491	0.55	+0.5
3,633,449	-	yhiM	b3491	0.56	+0.1
3,633,450	-	yhiM	b3491	0.56	-0.8
3,633,450	-	yhiM	b3491	0.56	-0.4
3,633,458	+	yhiM	b3491	0.56	-0.4
3,633,462	+	yhiM	b3491	0.57	-0.2
3,633,479	-	yhiM	b3491	0.58	+0.9