Strain Fitness in Escherichia coli BW25113 around b2758

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
2,878,096	-	ygcH	b2756	0.48	-0.1
2,878,100	-	ygcH	b2756	0.48	+0.0
2,878,106	-	ygcH	b2756	0.49	-0.6
2,878,156	-	ygcH	b2756	0.58	+0.4
2,878,156	-	ygcH	b2756	0.58	+0.3
2,878,178	-	ygcH	b2756	0.61	+1.2
2,878,183	+	ygcH	b2756	0.62	+1.8
2,878,233	+	ygcH	b2756	0.70	-0.7
2,878,233	+	ygcH	b2756	0.70	-0.5
2,878,265	+	ygcH	b2756	0.76	+1.3
2,878,266	-	ygcH	b2756	0.76	-0.2
2,878,271	-	ygcH	b2756	0.77	+0.4
2,878,274	-	ygcH	b2756	0.77	+0.1
2,878,312	+	ygcH	b2756	0.84	-0.4
2,878,321	-	ygcH	b2756	0.85	+0.3
2,878,377	-				-0.3
2,878,379	-				-0.3
2,878,394	-				+0.3
2,878,406	-				+0.8
2,878,415	-				+0.5
2,878,416	-				-0.6
2,878,416	-				-0.6
2,878,421	-				-0.3
2,878,421	-				+0.7
2,878,426	-				-0.0
2,878,426	-				+0.1
2,878,426	-				+0.6
2,878,426	-				+0.0
2,878,512	-	b2757	b2757	0.17	-0.7
2,878,512	-	b2757	b2757	0.17	-0.2
2,878,516	-	b2757	b2757	0.18	+0.2
2,878,518	-	b2757	b2757	0.18	+0.2
2,878,518	-	b2757	b2757	0.18	+0.7
2,878,533	-	b2757	b2757	0.20	+0.3
2,878,586	-	b2757	b2757	0.28	-0.4
2,878,589	-	b2757	b2757	0.29	+0.7
2,878,604	-	b2757	b2757	0.31	+0.1
2,878,622	+	b2757	b2757	0.33	+0.5
2,878,625	-	b2757	b2757	0.34	+0.1
2,878,630	+	b2757	b2757	0.35	+0.2
2,878,640	+	b2757	b2757	0.36	+0.8
2,878,640	+	b2757	b2757	0.36	-1.2
2,878,641	-	b2757	b2757	0.36	+0.4
2,878,646	-	b2757	b2757	0.37	+0.6
2,878,648	-	b2757	b2757	0.37	-0.1
2,878,648	-	b2757	b2757	0.37	-0.1
2,878,648	-	b2757	b2757	0.37	-0.2
2,878,648	-	b2757	b2757	0.37	-0.2
2,878,648	-	b2757	b2757	0.37	+0.5
2,878,648	-	b2757	b2757	0.37	-0.1
2,878,651	-	b2757	b2757	0.38	+0.2
2,878,685	+	b2757	b2757	0.43	-0.8
2,878,694	-	b2757	b2757	0.44	+0.1
2,878,701	+	b2757	b2757	0.45	-0.5
2,878,707	-	b2757	b2757	0.46	-0.2
2,878,711	-	b2757	b2757	0.47	+0.0
2,878,715	-	b2757	b2757	0.47	+0.6
2,878,716	-	b2757	b2757	0.47	-0.0
2,878,716	-	b2757	b2757	0.47	-0.1
2,878,716	-	b2757	b2757	0.47	+0.0
2,878,742	-	b2757	b2757	0.51	+0.4
2,878,802	+	b2757	b2757	0.60	+0.7
2,878,802	+	b2757	b2757	0.60	-1.3
2,878,809	-	b2757	b2757	0.61	-0.0
2,878,809	-	b2757	b2757	0.61	+0.4
2,878,838	-	b2757	b2757	0.65	+0.4
2,878,840	-	b2757	b2757	0.66	+0.2
2,878,902	-	b2757	b2757	0.75	+0.9
2,878,902	-	b2757	b2757	0.75	+0.4
2,878,930	-	b2757	b2757	0.79	+0.5
2,878,930	-	b2757	b2757	0.79	-0.2
2,878,946	+	b2757	b2757	0.81	-0.3
2,878,956	+	b2757	b2757	0.83	+1.0
2,878,956	+	b2757	b2757	0.83	+0.4
2,878,992	-	b2757	b2757	0.88	-0.3
2,878,992	-	b2757	b2757	0.88	+0.2
2,879,011	-				-1.1
2,879,026	+				-0.0
2,879,026	+				-0.1
2,879,111	+				-0.2
2,879,169	+				+0.5
2,879,182	+				-0.2
2,879,200	-	ygcJ	b2758	0.12	+0.3
2,879,232	+	ygcJ	b2758	0.15	+0.6
2,879,374	+	ygcJ	b2758	0.28	+1.1
2,879,381	+	ygcJ	b2758	0.28	+0.1
2,879,402	-	ygcJ	b2758	0.30	+0.1
2,879,402	-	ygcJ	b2758	0.30	+0.2
2,879,429	+	ygcJ	b2758	0.33	+0.8
2,879,439	-	ygcJ	b2758	0.34	-0.1
2,879,551	-	ygcJ	b2758	0.44	+0.4
2,879,594	-	ygcJ	b2758	0.48	+0.2
2,879,655	-	ygcJ	b2758	0.53	-0.0
2,879,655	-	ygcJ	b2758	0.53	+0.3
2,879,699	+	ygcJ	b2758	0.57	-0.4
2,879,699	+	ygcJ	b2758	0.57	+0.7
2,879,767	+	ygcJ	b2758	0.64	+0.5
2,879,767	+	ygcJ	b2758	0.64	-0.6
2,879,813	+	ygcJ	b2758	0.68	+0.5
2,879,813	-	ygcJ	b2758	0.68	+0.7
2,879,813	-	ygcJ	b2758	0.68	-0.0
2,880,101	-				+0.1
2,880,101	-				-0.2
2,880,109	-				-0.6
2,880,115	+				+0.5
2,880,116	-				+0.3
2,880,116	-				+0.5
2,880,124	-				+0.2
2,880,124	-				-0.2
2,880,135	-				-0.3
2,880,232	-	ygcK	b2759	0.11	-0.8
2,880,243	+	ygcK	b2759	0.14	-0.8
2,880,244	-	ygcK	b2759	0.14	-0.1
2,880,247	+	ygcK	b2759	0.14	+0.0
2,880,258	+	ygcK	b2759	0.17	+0.2
2,880,281	-	ygcK	b2759	0.22	+0.4
2,880,281	-	ygcK	b2759	0.22	-0.6
2,880,309	+	ygcK	b2759	0.27	+1.2
2,880,318	-	ygcK	b2759	0.29	-1.0
2,880,318	-				+1.1
2,880,387	-	ygcK	b2759	0.43	+0.2
2,880,387	-	ygcK	b2759	0.43	+0.7
2,880,404	-	ygcK	b2759	0.47	-0.2
2,880,404	-	ygcK	b2759	0.47	+0.0
2,880,407	-	ygcK	b2759	0.48	-0.1
2,880,407	-	ygcK	b2759	0.48	-0.4
2,880,409	+	ygcK	b2759	0.48	+0.0
2,880,409	+	ygcK	b2759	0.48	-0.6
2,880,410	-	ygcK	b2759	0.48	+0.1
2,880,456	-	ygcK	b2759	0.58	+0.8
2,880,463	-	ygcK	b2759	0.59	+0.2
2,880,480	+	ygcK	b2759	0.63	-0.7
2,880,480	+	ygcK	b2759	0.63	-0.5
2,880,509	-	ygcK	b2759	0.69	-0.0
2,880,509	-	ygcK	b2759	0.69	+0.3
2,880,535	-	ygcK	b2759	0.74	-0.9
2,880,535	-	ygcK	b2759	0.74	-2.6
2,880,541	-	ygcK	b2759	0.75	+0.1
2,880,558	-	ygcK	b2759	0.79	+1.4
2,880,588	-	ygcK	b2759	0.85	+0.8
2,880,595	+	ygcK	b2759	0.87	-1.5
2,880,595	+	ygcK	b2759	0.87	+0.6
2,880,627	+				+1.4
2,880,655	+				+0.2
2,880,655	+				+0.4
2,880,655	+				-0.6
2,880,655	+				+0.3
2,880,678	+				-1.8
2,880,678	+				+0.4
2,880,695	+				+0.3
2,880,695	+				+1.3
2,880,704	+				-0.4
2,880,720	+				-1.8
2,880,720	+				+0.2
2,880,758	-				+1.6
2,880,760	-				+0.8
2,880,769	-				-1.2
2,880,790	+				+0.5
2,880,790	-				+2.1
2,880,818	+	ygcL	b2760	0.11	+0.5
2,880,818	+	ygcL	b2760	0.11	-0.8
2,880,818	+	ygcL	b2760	0.11	-0.5
2,880,911	-	ygcL	b2760	0.17	-0.2
2,880,918	-	ygcL	b2760	0.18	+2.1
2,880,995	-	ygcL	b2760	0.23	-0.7
2,881,047	-	ygcL	b2760	0.26	+0.2
2,881,121	-	ygcL	b2760	0.31	+0.3