Strain Fitness in Escherichia coli BW25113 around b1676

Experiment: Ying_all64 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 3
1,752,920	-				+1.0
1,752,934	-				+1.4
1,753,041	-	ydhZ	b1675	0.40	-0.2
1,753,125	-	ydhZ	b1675	0.80	+0.1
1,753,126	-	ydhZ	b1675	0.81	-0.4
1,753,141	+	ydhZ	b1675	0.88	-1.1
1,753,300	-				+0.2
1,753,300	-				+0.6
1,753,313	+				-0.6
1,753,334	+				+1.2
1,753,334	+				-1.9
1,753,334	+				+2.3
1,753,342	-				+0.1
1,753,342	-				+0.2
1,753,342	-				+0.4
1,753,358	+				+0.4
1,753,500	-				+0.2
1,753,500	-				+0.5
1,753,563	+				+0.4
1,753,582	+				+0.1
1,753,615	+				+0.1
1,753,635	-				-0.8
1,753,696	+				-0.4
1,753,710	-				-3.0
1,753,710	-				-2.2
1,753,836	-				-1.8
1,753,836	-				-0.6
1,753,921	+	pykF	b1676	0.14	-0.9
1,753,983	+	pykF	b1676	0.18	-1.1
1,754,072	+	pykF	b1676	0.25	-1.9
1,754,121	-	pykF	b1676	0.28	-0.1
1,754,121	-	pykF	b1676	0.28	-1.2
1,754,319	-	pykF	b1676	0.42	-1.3
1,754,319	-	pykF	b1676	0.42	-1.7
1,754,319	-	pykF	b1676	0.42	-1.9
1,754,581	+	pykF	b1676	0.61	-1.4
1,754,581	+	pykF	b1676	0.61	-0.8
1,754,992	+	pykF	b1676	0.90	-3.0
1,755,104	+				-1.4
1,755,375	+				-0.1
1,755,410	+				-1.5
1,755,417	+				-2.4
1,755,476	-	lpp	b1677	0.13	-0.8
1,755,478	+	lpp	b1677	0.14	-2.3
1,755,485	+	lpp	b1677	0.17	-2.1
1,755,576	+	lpp	b1677	0.55	-1.5
1,755,662	+				-3.0
1,755,782	-				-0.6
1,755,985	-	ynhG	b1678	0.24	+0.1
1,755,985	-	ynhG	b1678	0.24	-0.2
1,756,008	+	ynhG	b1678	0.26	-0.8
1,756,008	+	ynhG	b1678	0.26	-0.5
1,756,016	+	ynhG	b1678	0.27	+0.1
1,756,016	-	ynhG	b1678	0.27	+0.3
1,756,016	-	ynhG	b1678	0.27	-0.4
1,756,080	+	ynhG	b1678	0.33	+0.1
1,756,080	+	ynhG	b1678	0.33	-0.8