Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ssuD and ycbO overlap by 4 nucleotides ycbO and ssuE overlap by 8 nucleotides ssuE and ycbQ are separated by 355 nucleotides ycbQ and ycbR are separated by 82 nucleotides
b0935: ssuD - alkanesulfonate monooxygenase (NCBI), at 994,066 to 995,211
ssuD
b0936: ycbO - orf, hypothetical protein (VIMSS), at 995,208 to 996,167
ycbO
b0937: ssuE - NAD(P)H-dependent FMN reductase (NCBI), at 996,160 to 996,735
ssuE
b0938: ycbQ - putative fimbrial-like protein (VIMSS), at 997,091 to 997,630
ycbQ
b0939: ycbR - predicted periplasmic pilin chaperone (NCBI), at 997,713 to 998,414
ycbR
Position (kb) 996
997 Strain fitness (log2 ratio) -2
-1
0
1
2 at 995.236 kb on - strand at 995.236 kb on - strand at 995.473 kb on - strand, within ycbO at 995.512 kb on + strand, within ycbO at 995.607 kb on + strand, within ycbO at 995.616 kb on + strand, within ycbO at 995.631 kb on + strand, within ycbO at 995.734 kb on - strand, within ycbO at 995.753 kb on - strand, within ycbO at 995.832 kb on - strand, within ycbO at 995.871 kb on + strand, within ycbO at 995.871 kb on + strand, within ycbO at 996.185 kb on + strand at 996.207 kb on - strand at 996.267 kb on + strand, within ssuE at 996.350 kb on - strand, within ssuE at 996.637 kb on + strand, within ssuE at 996.637 kb on + strand, within ssuE at 996.710 kb on + strand at 996.710 kb on + strand at 996.714 kb on + strand at 996.718 kb on - strand at 996.721 kb on + strand at 996.721 kb on + strand at 996.722 kb on - strand at 996.743 kb on + strand at 996.743 kb on + strand at 996.751 kb on - strand at 996.774 kb on + strand at 996.793 kb on + strand at 996.793 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 997.121 kb on + strand at 997.152 kb on - strand, within ycbQ at 997.152 kb on - strand, within ycbQ at 997.191 kb on - strand, within ycbQ at 997.257 kb on + strand, within ycbQ at 997.347 kb on - strand, within ycbQ at 997.347 kb on - strand, within ycbQ at 997.347 kb on - strand, within ycbQ at 997.374 kb on + strand, within ycbQ at 997.390 kb on + strand, within ycbQ at 997.402 kb on + strand, within ycbQ at 997.423 kb on + strand, within ycbQ at 997.423 kb on + strand, within ycbQ at 997.424 kb on + strand, within ycbQ at 997.429 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.485 kb on - strand, within ycbQ at 997.486 kb on + strand, within ycbQ at 997.486 kb on + strand, within ycbQ at 997.525 kb on + strand, within ycbQ at 997.525 kb on + strand, within ycbQ at 997.545 kb on + strand, within ycbQ at 997.566 kb on + strand, within ycbQ at 997.573 kb on + strand, within ycbQ at 997.573 kb on + strand, within ycbQ at 997.573 kb on + strand, within ycbQ at 997.586 kb on + strand at 997.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 3 remove 995,236 - -0.2 995,236 - +0.9 995,473 - ycbO b0936 0.28 +0.3 995,512 + ycbO b0936 0.32 -0.8 995,607 + ycbO b0936 0.42 +0.0 995,616 + ycbO b0936 0.42 +0.1 995,631 + ycbO b0936 0.44 +0.1 995,734 - ycbO b0936 0.55 +0.4 995,753 - ycbO b0936 0.57 +0.1 995,832 - ycbO b0936 0.65 -0.0 995,871 + ycbO b0936 0.69 +0.4 995,871 + ycbO b0936 0.69 -0.0 996,185 + +0.2 996,207 - -0.1 996,267 + ssuE b0937 0.19 +0.6 996,350 - ssuE b0937 0.33 +0.4 996,637 + ssuE b0937 0.83 +1.7 996,637 + ssuE b0937 0.83 -0.2 996,710 + -0.4 996,710 + +0.5 996,714 + +0.8 996,718 - +0.2 996,721 + -0.3 996,721 + +0.0 996,722 - -0.0 996,743 + -0.4 996,743 + +0.1 996,751 - -1.0 996,774 + -1.0 996,793 + +0.3 996,793 + +0.1 996,797 + -0.3 996,797 + +0.3 997,121 + +1.9 997,152 - ycbQ b0938 0.11 +1.9 997,152 - ycbQ b0938 0.11 +1.9 997,191 - ycbQ b0938 0.19 +0.9 997,257 + ycbQ b0938 0.31 -0.7 997,347 - ycbQ b0938 0.47 +1.9 997,347 - ycbQ b0938 0.47 +1.9 997,347 - ycbQ b0938 0.47 +1.9 997,374 + ycbQ b0938 0.52 +1.9 997,390 + ycbQ b0938 0.55 -0.6 997,402 + ycbQ b0938 0.58 +1.9 997,423 + ycbQ b0938 0.61 -0.0 997,423 + ycbQ b0938 0.61 -1.6 997,424 + ycbQ b0938 0.62 -0.3 997,429 + ycbQ b0938 0.63 -1.8 997,454 + ycbQ b0938 0.67 +0.6 997,454 + ycbQ b0938 0.67 -1.3 997,454 + ycbQ b0938 0.67 +0.6 997,454 + ycbQ b0938 0.67 +0.4 997,485 - ycbQ b0938 0.73 +1.9 997,486 + ycbQ b0938 0.73 +0.2 997,486 + ycbQ b0938 0.73 +0.7 997,525 + ycbQ b0938 0.80 -0.1 997,525 + ycbQ b0938 0.80 +0.4 997,545 + ycbQ b0938 0.84 -0.1 997,566 + ycbQ b0938 0.88 -0.3 997,573 + ycbQ b0938 0.89 -0.5 997,573 + ycbQ b0938 0.89 -0.4 997,573 + ycbQ b0938 0.89 -0.1 997,586 + -0.5 997,586 + -1.1
Or see this region's nucleotide sequence