Strain Fitness in Escherichia coli BW25113 around b0631
Experiment: Ying_all64 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Ying_all64 rep A; time point 3 |
|---|---|---|---|---|---|
| remove | |||||
| 660,730 | - | +2.0 | |||
| 660,850 | - | +1.0 | |||
| 660,850 | - | +2.0 | |||
| 661,084 | - | lipB | b0630 | 0.35 | +0.4 |
| 661,146 | + | lipB | b0630 | 0.45 | -0.0 |
| 661,264 | + | lipB | b0630 | 0.63 | +0.0 |
| 661,509 | + | -0.2 | |||
| 661,519 | - | +0.1 | |||
| 661,957 | - | +0.1 | |||
| 661,957 | - | +0.5 | |||
| 662,131 | + | dacA | b0632 | 0.13 | -3.6 |
| 662,153 | - | dacA | b0632 | 0.15 | -2.9 |
| 662,155 | + | dacA | b0632 | 0.15 | -0.0 |
| 662,160 | + | dacA | b0632 | 0.15 | -0.8 |
| 662,160 | + | dacA | b0632 | 0.15 | -2.0 |
| 662,255 | + | dacA | b0632 | 0.23 | -2.6 |
| 662,380 | - | dacA | b0632 | 0.33 | -2.2 |
| 662,380 | - | dacA | b0632 | 0.33 | -3.3 |
| 662,462 | - | dacA | b0632 | 0.40 | -2.1 |
| 662,462 | - | dacA | b0632 | 0.40 | -2.5 |
| 662,609 | - | dacA | b0632 | 0.52 | -2.1 |
| 662,609 | - | dacA | b0632 | 0.52 | -3.0 |
| 662,618 | + | dacA | b0632 | 0.53 | -2.7 |
| 662,618 | + | dacA | b0632 | 0.53 | -2.1 |
| 662,618 | + | dacA | b0632 | 0.53 | -3.4 |
| 662,618 | + | dacA | b0632 | 0.53 | -4.1 |
| 662,618 | + | dacA | b0632 | 0.53 | -3.9 |
| 662,620 | + | dacA | b0632 | 0.53 | -3.1 |
| 662,644 | + | dacA | b0632 | 0.55 | -2.3 |
| 662,644 | + | dacA | b0632 | 0.55 | -3.8 |
| 662,644 | + | dacA | b0632 | 0.55 | -2.4 |
| 662,644 | + | dacA | b0632 | 0.55 | -2.7 |
| 662,652 | - | dacA | b0632 | 0.56 | -1.2 |
| 662,652 | - | dacA | b0632 | 0.56 | -3.5 |
| 662,864 | + | dacA | b0632 | 0.73 | -3.8 |
Or see this region's nucleotide sequence