Strain Fitness in Escherichia coli BW25113 around b3753

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
3,935,280	+				-0.5
3,935,420	+	rbsK	b3752	0.11	+2.3
3,935,420	+	rbsK	b3752	0.11	+0.4
3,935,469	-	rbsK	b3752	0.16	+5.2
3,935,485	-	rbsK	b3752	0.18	+4.0
3,935,493	-	rbsK	b3752	0.19	+4.2
3,935,517	-	rbsK	b3752	0.22	+4.6
3,935,517	-	rbsK	b3752	0.22	+4.7
3,935,519	+	rbsK	b3752	0.22	+1.8
3,935,519	+	rbsK	b3752	0.22	+2.2
3,935,522	-	rbsK	b3752	0.22	+4.9
3,935,522	-	rbsK	b3752	0.22	+5.1
3,935,542	-	rbsK	b3752	0.24	+5.9
3,935,542	-	rbsK	b3752	0.24	+4.9
3,935,551	+	rbsK	b3752	0.25	+1.7
3,935,551	+	rbsK	b3752	0.25	+1.3
3,935,560	-	rbsK	b3752	0.26	+5.0
3,935,577	-	rbsK	b3752	0.28	+6.3
3,935,650	+	rbsK	b3752	0.36	+1.4
3,935,656	-	rbsK	b3752	0.36	+5.6
3,935,661	+	rbsK	b3752	0.37	+1.5
3,935,666	+	rbsK	b3752	0.38	+2.8
3,935,669	-	rbsK	b3752	0.38	+4.6
3,935,669	-	rbsK	b3752	0.38	+5.1
3,935,669	-	rbsK	b3752	0.38	+4.2
3,935,711	+	rbsK	b3752	0.42	+1.4
3,935,742	+	rbsK	b3752	0.46	+0.6
3,935,798	-	rbsK	b3752	0.52	+4.7
3,935,798	-	rbsK	b3752	0.52	+5.7
3,935,808	+	rbsK	b3752	0.53	+0.4
3,935,942	+	rbsK	b3752	0.67	+0.8
3,935,946	+	rbsK	b3752	0.68	+1.2
3,935,946	+	rbsK	b3752	0.68	-0.6
3,935,955	-	rbsK	b3752	0.69	+4.9
3,935,969	+	rbsK	b3752	0.70	-1.7
3,935,969	+	rbsK	b3752	0.70	+0.2
3,935,977	-	rbsK	b3752	0.71	+5.0
3,935,977	-	rbsK	b3752	0.71	+5.6
3,935,983	+	rbsK	b3752	0.72	+0.7
3,936,007	-	rbsK	b3752	0.74	+4.4
3,936,007	-	rbsK	b3752	0.74	+4.6
3,936,007	-	rbsK	b3752	0.74	+5.2
3,936,009	-	rbsK	b3752	0.74	+5.5
3,936,028	-	rbsK	b3752	0.76	+5.3
3,936,028	-	rbsK	b3752	0.76	+5.1
3,936,048	+	rbsK	b3752	0.79	-2.0
3,936,055	-	rbsK	b3752	0.79	+6.0
3,936,074	-	rbsK	b3752	0.81	+5.8
3,936,074	-	rbsK	b3752	0.81	+5.5
3,936,082	+	rbsK	b3752	0.82	-3.1
3,936,082	+	rbsK	b3752	0.82	-0.4
3,936,197	+				+0.2
3,936,338	-				+5.2
3,936,338	-				+5.3
3,936,395	+	rbsR	b3753	0.15	+10.7
3,936,407	+	rbsR	b3753	0.16	+5.1
3,936,415	-	rbsR	b3753	0.17	+6.1
3,936,444	-	rbsR	b3753	0.20	+5.3
3,936,447	-	rbsR	b3753	0.20	+5.4
3,936,456	+	rbsR	b3753	0.21	+5.4
3,936,456	+	rbsR	b3753	0.21	+5.8
3,936,463	-	rbsR	b3753	0.21	+5.7
3,936,470	+	rbsR	b3753	0.22	+5.8
3,936,470	+	rbsR	b3753	0.22	+6.1
3,936,473	-	rbsR	b3753	0.22	+5.0
3,936,473	-	rbsR	b3753	0.22	+4.6
3,936,496	-	rbsR	b3753	0.25	+5.4
3,936,496	-	rbsR	b3753	0.25	+5.5
3,936,545	+	rbsR	b3753	0.30	+5.7
3,936,659	+	rbsR	b3753	0.41	+5.7
3,936,667	+	rbsR	b3753	0.42	+5.3
3,936,667	+	rbsR	b3753	0.42	+5.8
3,936,667	+	rbsR	b3753	0.42	+5.6
3,936,684	-	rbsR	b3753	0.44	+4.5
3,936,684	-	rbsR	b3753	0.44	+4.7
3,936,686	+	rbsR	b3753	0.44	+5.7
3,936,723	-	rbsR	b3753	0.48	+5.8
3,936,726	-	rbsR	b3753	0.48	+4.4
3,936,763	-	rbsR	b3753	0.52	+4.8
3,936,769	+	rbsR	b3753	0.52	+4.7
3,936,794	+	rbsR	b3753	0.55	+5.7
3,936,842	-	rbsR	b3753	0.60	+5.6
3,936,868	+	rbsR	b3753	0.62	+5.8
3,936,868	+	rbsR	b3753	0.62	+5.9
3,936,868	+	rbsR	b3753	0.62	+5.7
3,936,875	+	rbsR	b3753	0.63	+5.7
3,936,876	-	rbsR	b3753	0.63	+5.7
3,936,876	-	rbsR	b3753	0.63	+5.4
3,936,878	+	rbsR	b3753	0.63	+5.4
3,936,878	+	rbsR	b3753	0.63	+5.6
3,936,943	+	rbsR	b3753	0.70	+5.4
3,936,953	-	rbsR	b3753	0.71	+5.2
3,936,953	-	rbsR	b3753	0.71	+5.2
3,936,989	+	rbsR	b3753	0.74	+6.2
3,936,989	+	rbsR	b3753	0.74	+5.5
3,936,990	+	rbsR	b3753	0.75	+5.9
3,936,992	+	rbsR	b3753	0.75	+5.6
3,937,039	+	rbsR	b3753	0.79	+5.7
3,937,055	-	rbsR	b3753	0.81	+5.9
3,937,101	+	rbsR	b3753	0.86	+5.7
3,937,124	-	rbsR	b3753	0.88	+5.7
3,937,124	-	rbsR	b3753	0.88	+5.4
3,937,130	-	rbsR	b3753	0.89	+5.9
3,937,137	+	rbsR	b3753	0.89	+5.7
3,937,174	+				+5.8
3,937,174	+				+5.7
3,937,177	-				+5.5
3,937,184	-				+4.6
3,937,186	+				+5.8
3,937,186	+				+5.5
3,937,201	+				+4.8
3,937,205	+				+5.6
3,937,244	-				-1.1
3,937,244	-				-1.6
3,937,312	-				+0.5
3,937,318	-				-1.2
3,937,318	-				-0.5
3,937,342	-				+1.0
3,937,365	+	hsrA	b3754	0.11	+0.9
3,937,373	+	hsrA	b3754	0.12	+0.3
3,937,406	+	hsrA	b3754	0.14	+0.1
3,937,418	+	hsrA	b3754	0.15	-0.9
3,937,458	+	hsrA	b3754	0.18	+0.4
3,937,458	-	hsrA	b3754	0.18	+0.3
3,937,467	+	hsrA	b3754	0.18	-0.4
3,937,470	-	hsrA	b3754	0.18	-3.4
3,937,470	-	hsrA	b3754	0.18	+0.1
3,937,498	+	hsrA	b3754	0.20	-1.1
3,937,506	+	hsrA	b3754	0.21	+0.8
3,937,506	-	hsrA	b3754	0.21	-2.0
3,937,506	-	hsrA	b3754	0.21	-0.0
3,937,511	-	hsrA	b3754	0.21	+0.2
3,937,523	-	hsrA	b3754	0.22	-2.2
3,937,533	-	hsrA	b3754	0.23	+0.3
3,937,533	-	hsrA	b3754	0.23	+0.7
3,937,541	+	hsrA	b3754	0.23	+0.0
3,937,549	-	hsrA	b3754	0.24	+0.3
3,937,570	-	hsrA	b3754	0.25	-3.5
3,937,570	-	hsrA	b3754	0.25	+0.0
3,937,579	-	hsrA	b3754	0.26	+1.3
3,937,579	-	hsrA	b3754	0.26	+1.0
3,937,592	-	hsrA	b3754	0.27	-1.6
3,937,592	-	hsrA	b3754	0.27	+0.4
3,937,596	+	hsrA	b3754	0.27	+1.7
3,937,630	+	hsrA	b3754	0.30	+1.2
3,937,647	-	hsrA	b3754	0.31	-0.7
3,937,647	-	hsrA	b3754	0.31	+0.2
3,937,651	+	hsrA	b3754	0.31	-0.8
3,937,654	-	hsrA	b3754	0.31	+0.9
3,937,665	-	hsrA	b3754	0.32	+0.1
3,937,667	+	hsrA	b3754	0.32	+0.9
3,937,725	+	hsrA	b3754	0.36	-0.4
3,937,759	+	hsrA	b3754	0.39	+1.3
3,937,789	+	hsrA	b3754	0.41	-0.4
3,937,789	+	hsrA	b3754	0.41	-0.7
3,937,792	+	hsrA	b3754	0.41	+0.9
3,937,792	+	hsrA	b3754	0.41	+0.3
3,937,792	+	hsrA	b3754	0.41	-2.3
3,937,797	-	hsrA	b3754	0.41	-4.1
3,937,797	-	hsrA	b3754	0.41	-0.2
3,937,800	-	hsrA	b3754	0.41	+1.0
3,937,800	-	hsrA	b3754	0.41	-3.9
3,937,800	-	hsrA	b3754	0.41	-0.0
3,937,832	-	hsrA	b3754	0.44	+0.9
3,937,995	-	hsrA	b3754	0.55	+1.5
3,937,995	-	hsrA	b3754	0.55	+0.1
3,938,052	-	hsrA	b3754	0.59	-1.4
3,938,059	+	hsrA	b3754	0.60	-0.0
3,938,059	+	hsrA	b3754	0.60	+0.0
3,938,106	+	hsrA	b3754	0.63	-0.1
3,938,106	+	hsrA	b3754	0.63	+0.3
3,938,149	-	hsrA	b3754	0.66	+0.6
3,938,154	+	hsrA	b3754	0.66	-1.1
3,938,207	-	hsrA	b3754	0.70	-0.3