Strain Fitness in Escherichia coli BW25113 around b3649
Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep B; time point 2 |
---|---|---|---|---|---|
remove | |||||
3,819,130 | - | -2.3 | |||
3,819,173 | - | -0.3 | |||
3,819,191 | + | +0.3 | |||
3,819,197 | - | +0.1 | |||
3,819,197 | - | +0.0 | |||
3,819,212 | - | -0.7 | |||
3,819,234 | + | +0.2 | |||
3,819,252 | - | +0.5 | |||
3,819,252 | - | -0.4 | |||
3,819,303 | - | -0.3 | |||
3,819,394 | - | -0.3 | |||
3,819,394 | - | -0.5 | |||
3,820,087 | - | +1.5 | |||
3,820,111 | - | +1.5 | |||
3,820,144 | + | +2.2 | |||
3,820,144 | + | +2.2 | |||
3,820,151 | + | -0.4 | |||
3,820,205 | + | rpoZ | b3649 | 0.28 | -0.6 |
3,820,205 | + | rpoZ | b3649 | 0.28 | +2.3 |
3,820,210 | + | rpoZ | b3649 | 0.29 | +1.6 |
3,820,297 | + | rpoZ | b3649 | 0.61 | +1.7 |
3,820,297 | + | rpoZ | b3649 | 0.61 | +1.3 |
3,820,340 | + | rpoZ | b3649 | 0.76 | -2.6 |
3,820,341 | - | rpoZ | b3649 | 0.77 | -2.1 |
3,820,365 | + | rpoZ | b3649 | 0.86 | -0.2 |
3,820,420 | + | +0.2 | |||
3,820,420 | + | -0.1 | |||
3,820,448 | - | +0.2 | |||
3,820,452 | + | +1.4 |
Or see this region's nucleotide sequence