Strain Fitness in Escherichia coli BW25113 around b2665

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
2,793,379	+	gabP	b2663	0.79	+0.8
2,793,379	+	gabP	b2663	0.79	+1.0
2,793,387	-	gabP	b2663	0.79	-0.6
2,793,388	-	gabP	b2663	0.79	-1.6
2,793,388	-	gabP	b2663	0.79	+1.3
2,793,451	-	gabP	b2663	0.84	+1.4
2,793,487	+	gabP	b2663	0.87	-1.1
2,793,488	+	gabP	b2663	0.87	+1.0
2,793,490	-	gabP	b2663	0.87	+1.0
2,793,490	-	gabP	b2663	0.87	+0.8
2,793,491	-	gabP	b2663	0.87	+1.7
2,793,500	-	gabP	b2663	0.87	-0.8
2,793,502	-	gabP	b2663	0.88	+1.3
2,793,523	+	gabP	b2663	0.89	+0.1
2,793,535	+	gabP	b2663	0.90	-0.2
2,793,543	-				+2.1
2,793,543	-				+0.3
2,793,543	-				+0.1
2,793,557	+				-1.6
2,793,557	+				-2.3
2,793,565	+				-0.2
2,793,565	+				-0.4
2,793,605	-				-0.6
2,793,605	-				+0.6
2,793,605	-				-2.6
2,793,605	-				-0.1
2,793,605	-				+1.6
2,793,605	-				+0.3
2,793,663	+				-0.4
2,793,674	+				-0.8
2,793,674	+				+0.5
2,793,674	+				-0.9
2,793,680	+				+0.4
2,793,683	-				+2.4
2,793,686	+				+0.2
2,793,692	+				-0.2
2,793,694	-				+0.3
2,793,694	-				+0.1
2,793,699	+				+3.4
2,793,700	-				+0.6
2,793,716	-				+0.3
2,793,716	-				+1.5
2,793,725	-				+1.2
2,793,811	+	ygaE	b2664	0.17	+3.2
2,793,829	-	ygaE	b2664	0.20	+0.4
2,793,829	-	ygaE	b2664	0.20	+1.6
2,793,846	+	ygaE	b2664	0.23	+3.1
2,793,906	+	ygaE	b2664	0.32	+3.9
2,793,906	+	ygaE	b2664	0.32	+3.1
2,793,954	+	ygaE	b2664	0.39	+4.2
2,793,990	+	ygaE	b2664	0.44	+3.2
2,794,041	-	ygaE	b2664	0.52	+2.7
2,794,085	-				+4.1
2,794,085	-				+3.5
2,794,239	+	ygaE	b2664	0.82	+4.2
2,794,239	+	ygaE	b2664	0.82	+4.4
2,794,271	+	ygaE	b2664	0.87	+4.4
2,794,299	+				+4.9
2,794,372	-				+1.3
2,794,372	-				+0.7
2,794,418	-	ygaU	b2665	0.13	+0.3
2,794,462	+	ygaU	b2665	0.23	+0.5
2,794,469	-	ygaU	b2665	0.24	+1.0
2,794,480	-	ygaU	b2665	0.27	+1.1
2,794,518	-	ygaU	b2665	0.35	+4.2
2,794,554	+	ygaU	b2665	0.43	-0.1
2,794,554	+	ygaU	b2665	0.43	-1.4
2,794,562	-	ygaU	b2665	0.45	-0.9
2,794,623	-	ygaU	b2665	0.59	+1.2
2,794,623	-	ygaU	b2665	0.59	-0.7
2,794,628	+	ygaU	b2665	0.60	-0.4
2,794,712	+	ygaU	b2665	0.78	+0.2
2,794,758	-	ygaU	b2665	0.89	+0.6
2,794,758	-	ygaU	b2665	0.89	+0.8
2,794,808	+				-0.3
2,794,812	-				-0.9
2,794,835	-				-0.0
2,794,835	-				-0.4
2,794,851	+				+0.4
2,794,851	+				+0.4
2,794,877	+				-0.1
2,794,880	-				+0.1
2,794,880	-				-0.8
2,794,887	-				-2.3
2,794,887	-				-2.1
2,794,892	-				-0.4
2,794,892	-				-0.1
2,794,985	+	yqaE	b2666	0.58	+0.0
2,794,987	-	yqaE	b2666	0.60	+0.0
2,794,997	+	yqaE	b2666	0.66	+0.8
2,794,997	-	yqaE	b2666	0.66	+1.1
2,795,054	-				+0.7
2,795,054	-				-1.2
2,795,066	-				-2.5
2,795,066	-				+1.0
2,795,154	-				+0.2
2,795,289	-	ygaV	b2667	0.19	-0.9
2,795,295	+	ygaV	b2667	0.21	-0.4
2,795,330	-	ygaV	b2667	0.32	-3.2
2,795,372	+	ygaV	b2667	0.46	+0.6
2,795,374	+	ygaV	b2667	0.47	+0.8
2,795,380	-	ygaV	b2667	0.49	+1.8
2,795,380	-	ygaV	b2667	0.49	+1.3
2,795,384	+	ygaV	b2667	0.50	-0.9
2,795,386	-	ygaV	b2667	0.51	+0.9
2,795,388	+	ygaV	b2667	0.52	-0.0
2,795,390	-	ygaV	b2667	0.52	+0.8
2,795,401	-	ygaV	b2667	0.56	+1.2
2,795,409	+	ygaV	b2667	0.59	-0.4
2,795,413	+	ygaV	b2667	0.60	+0.2
2,795,423	+	ygaV	b2667	0.63	-0.1
2,795,423	+	ygaV	b2667	0.63	-0.4
2,795,431	+	ygaV	b2667	0.66	-0.5
2,795,434	+	ygaV	b2667	0.67	-0.3
2,795,437	-	ygaV	b2667	0.68	+2.1
2,795,439	+	ygaV	b2667	0.69	+1.1
2,795,439	+	ygaV	b2667	0.69	-0.4
2,795,441	+	ygaV	b2667	0.69	+0.1
2,795,449	-	ygaV	b2667	0.72	+2.3
2,795,449	-	ygaV	b2667	0.72	-1.0
2,795,449	-	ygaV	b2667	0.72	-1.6
2,795,449	-	ygaV	b2667	0.72	+0.7
2,795,449	-	ygaV	b2667	0.72	+1.9
2,795,450	-	ygaV	b2667	0.72	-2.2
2,795,458	-	ygaV	b2667	0.75	-1.3
2,795,460	-	ygaV	b2667	0.76	+1.9
2,795,460	-	ygaV	b2667	0.76	-0.5
2,795,460	-	ygaV	b2667	0.76	-2.4
2,795,497	+	ygaV	b2667	0.88	-0.5
2,795,497	+	ygaV	b2667	0.88	+0.7
2,795,508	+				-0.8
2,795,522	+				+0.7
2,795,522	+				+0.1
2,795,527	-				+1.9
2,795,527	-				+0.6
2,795,534	+				+0.5
2,795,534	+				-1.2
2,795,534	-				-2.4
2,795,534	-				-2.6
2,795,536	+				-0.4
2,795,539	+				+0.8
2,795,540	+				+0.3
2,795,542	-				+2.1
2,795,646	+	ygaP	b2668	0.20	+0.0
2,795,665	+	ygaP	b2668	0.23	-0.4
2,795,665	+	ygaP	b2668	0.23	+1.2
2,795,703	+	ygaP	b2668	0.31	-1.2
2,795,703	+	ygaP	b2668	0.31	-1.0
2,795,727	+	ygaP	b2668	0.35	-0.8
2,795,727	+	ygaP	b2668	0.35	+2.2
2,795,733	-	ygaP	b2668	0.36	+0.9
2,795,740	+	ygaP	b2668	0.38	-0.5
2,795,748	+	ygaP	b2668	0.39	-0.1
2,795,758	-	ygaP	b2668	0.41	-1.8
2,795,779	+	ygaP	b2668	0.45	+0.1
2,795,806	+	ygaP	b2668	0.50	-0.1