Strain Fitness in Escherichia coli BW25113 around b2049
Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ying_Others16 rep B; time point 2 |
---|---|---|---|---|---|
remove | |||||
2,120,189 | + | cpsG | b2048 | 0.41 | -2.1 |
2,120,628 | - | cpsG | b2048 | 0.73 | +0.4 |
2,120,645 | - | cpsG | b2048 | 0.74 | +1.2 |
2,120,645 | - | cpsG | b2048 | 0.74 | -0.1 |
2,120,689 | + | cpsG | b2048 | 0.77 | -0.1 |
2,120,759 | + | cpsG | b2048 | 0.82 | +0.8 |
2,120,759 | + | cpsG | b2048 | 0.82 | +1.9 |
2,120,782 | - | cpsG | b2048 | 0.84 | -2.0 |
2,120,814 | + | cpsG | b2048 | 0.86 | -1.0 |
2,120,823 | - | cpsG | b2048 | 0.87 | -0.1 |
2,120,880 | - | +0.4 | |||
2,120,880 | - | -0.1 | |||
2,121,026 | + | +0.0 | |||
2,121,026 | + | -0.5 | |||
2,121,027 | + | +0.2 | |||
2,121,354 | + | cpsB | b2049 | 0.17 | +1.7 |
2,121,354 | + | cpsB | b2049 | 0.17 | -2.9 |
2,121,452 | + | cpsB | b2049 | 0.24 | +0.3 |
2,121,452 | + | cpsB | b2049 | 0.24 | +0.5 |
2,121,504 | + | cpsB | b2049 | 0.28 | +0.8 |
2,121,605 | + | cpsB | b2049 | 0.35 | +0.7 |
2,121,742 | + | cpsB | b2049 | 0.44 | -0.4 |
2,121,742 | + | cpsB | b2049 | 0.44 | +1.3 |
2,121,969 | + | cpsB | b2049 | 0.60 | +0.8 |
2,122,061 | + | cpsB | b2049 | 0.66 | +0.4 |
2,122,061 | + | cpsB | b2049 | 0.66 | +1.6 |
2,122,748 | + | wcaI | b2050 | 0.16 | +0.4 |
2,122,748 | + | wcaI | b2050 | 0.16 | -1.0 |
2,123,290 | + | wcaI | b2050 | 0.61 | +0.2 |
2,123,290 | + | wcaI | b2050 | 0.61 | -0.6 |
2,123,479 | + | wcaI | b2050 | 0.76 | -0.3 |
Or see this region's nucleotide sequence