Strain Fitness in Escherichia coli BW25113 around b1048

Experiment: Ying_Others16 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 2
1,107,570	-	mdoC	b1047	0.49	+2.9
1,107,576	-	mdoC	b1047	0.49	+2.9
1,107,576	-	mdoC	b1047	0.49	+2.9
1,107,606	-	mdoC	b1047	0.52	+2.9
1,107,719	-	mdoC	b1047	0.61	-0.8
1,107,721	-	mdoC	b1047	0.62	+1.7
1,107,721	-	mdoC	b1047	0.62	+0.9
1,107,721	-	mdoC	b1047	0.62	-0.8
1,107,721	-	mdoC	b1047	0.62	-0.3
1,107,721	-	mdoC	b1047	0.62	+0.7
1,107,723	-	mdoC	b1047	0.62	-2.0
1,107,728	-	mdoC	b1047	0.62	-1.1
1,107,733	-	mdoC	b1047	0.63	-2.6
1,107,781	-	mdoC	b1047	0.67	-3.9
1,107,792	-	mdoC	b1047	0.68	+2.0
1,107,800	-	mdoC	b1047	0.68	-3.4
1,107,800	-	mdoC	b1047	0.68	+0.2
1,107,800	-	mdoC	b1047	0.68	+0.9
1,107,845	-	mdoC	b1047	0.72	+1.2
1,107,867	-	mdoC	b1047	0.74	-2.6
1,107,867	-	mdoC	b1047	0.74	-1.4
1,107,870	-	mdoC	b1047	0.75	-0.4
1,107,872	+	mdoC	b1047	0.75	+1.9
1,107,878	-	mdoC	b1047	0.75	+0.2
1,107,880	-	mdoC	b1047	0.75	+0.4
1,107,880	-	mdoC	b1047	0.75	-0.4
1,107,880	-	mdoC	b1047	0.75	-3.3
1,107,885	+	mdoC	b1047	0.76	+2.9
1,107,888	-	mdoC	b1047	0.76	-1.6
1,107,929	+	mdoC	b1047	0.80	-1.1
1,107,930	-	mdoC	b1047	0.80	+0.0
1,108,012	-	mdoC	b1047	0.87	-2.3
1,108,025	-	mdoC	b1047	0.88	-1.7
1,108,031	-	mdoC	b1047	0.88	-1.8
1,108,034	-	mdoC	b1047	0.89	+0.9
1,108,035	-	mdoC	b1047	0.89	-0.3
1,108,053	+				-0.6
1,108,061	-				+0.7
1,108,061	-				-0.5
1,108,061	-				+2.6
1,108,061	-				-1.3
1,108,095	+				+1.9
1,108,095	+				+1.9
1,108,105	-				-1.7
1,108,105	-				-2.1
1,108,116	+				+1.6
1,108,159	-				-1.7
1,108,167	-				+0.4
1,108,222	-				+0.3
1,108,228	+				+0.1
1,108,230	+				-1.0
1,108,234	-				-2.4
1,108,234	-				-0.8
1,108,236	-				+0.2
1,108,242	+				-1.0
1,108,250	-				-1.1
1,108,263	+				+0.4
1,108,283	+				-0.2
1,108,291	+				+0.7
1,108,296	+				+0.7
1,108,307	+				-0.1
1,108,315	-				+0.5
1,108,416	-				+0.7
1,108,434	-				+0.5
1,108,440	+				-2.7
1,108,450	+				+2.1
1,108,453	-				-0.1
1,108,453	-				-2.5
1,108,537	-				-1.5
1,108,594	-				+3.5
1,108,602	+				+3.5
1,108,607	-				+1.0
1,108,617	-				+3.9
1,108,628	+				+0.1
1,108,636	-				+2.3
1,108,659	-				+1.3
1,108,672	+				+0.9
1,108,729	+	mdoG	b1048	0.11	-1.1
1,108,774	+	mdoG	b1048	0.14	+1.9
1,108,808	+	mdoG	b1048	0.16	+1.8
1,108,813	+	mdoG	b1048	0.17	+1.0
1,108,864	-	mdoG	b1048	0.20	+1.9
1,108,864	-	mdoG	b1048	0.20	+1.3
1,108,881	-	mdoG	b1048	0.21	+2.5
1,108,881	-	mdoG	b1048	0.21	+1.2
1,108,917	-	mdoG	b1048	0.23	+2.6
1,109,039	+	mdoG	b1048	0.31	+1.4
1,109,057	-	mdoG	b1048	0.32	+0.3
1,109,233	-	mdoG	b1048	0.44	+2.4
1,109,324	-				-0.5
1,109,386	+	mdoG	b1048	0.54	+1.7
1,109,386	+	mdoG	b1048	0.54	+2.8
1,109,388	+	mdoG	b1048	0.54	+2.1
1,109,395	-	mdoG	b1048	0.54	+2.1
1,109,425	+	mdoG	b1048	0.56	+2.3
1,109,425	+	mdoG	b1048	0.56	+2.3
1,109,493	+	mdoG	b1048	0.61	+0.1
1,109,493	+	mdoG	b1048	0.61	+0.2
1,109,501	-	mdoG	b1048	0.61	+2.4
1,109,501	-	mdoG	b1048	0.61	+2.1
1,109,501	-	mdoG	b1048	0.61	-1.1
1,109,704	-	mdoG	b1048	0.75	+3.3
1,109,704	-	mdoG	b1048	0.75	+1.2
1,109,785	-	mdoG	b1048	0.80	+1.8
1,109,806	-	mdoG	b1048	0.81	+2.4
1,109,945	+				+2.6
1,109,954	-				+2.5
1,110,148	+				+0.8
1,110,215	+				+0.1
1,110,215	+				+0.1
1,110,259	-				+1.4
1,110,259	-				+1.3
1,110,260	+				+1.5
1,110,269	-				+2.5
1,110,432	-	mdoH	b1049	0.14	+1.5
1,110,432	-	mdoH	b1049	0.14	+2.9
1,110,546	+				+3.1
1,110,546	+				+2.8
1,110,546	+	mdoH	b1049	0.18	+1.6
1,110,554	-	mdoH	b1049	0.18	+1.6
1,110,554	-	mdoH	b1049	0.18	+2.5
1,110,606	-	mdoH	b1049	0.20	+3.0
1,110,645	-	mdoH	b1049	0.22	+2.9
1,110,645	-	mdoH	b1049	0.22	+2.8
1,110,651	-	mdoH	b1049	0.22	+2.0
1,110,665	+	mdoH	b1049	0.23	+1.8
1,110,678	+	mdoH	b1049	0.23	+0.3
1,110,678	+	mdoH	b1049	0.23	+1.2
1,110,763	+				+2.3
1,110,800	+	mdoH	b1049	0.28	+2.0
1,110,924	+	mdoH	b1049	0.33	+2.9
1,110,924	+	mdoH	b1049	0.33	+1.2
1,110,942	+	mdoH	b1049	0.34	+2.5
1,110,950	-	mdoH	b1049	0.34	+1.3
1,110,950	-	mdoH	b1049	0.34	+1.1
1,111,075	+	mdoH	b1049	0.39	+1.5