Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhG and ybiH overlap by 1 nucleotides ybiH and rhlE are separated by 228 nucleotides rhlE and ybiA are separated by 231 nucleotides ybiA and dinG are separated by 119 nucleotides
b0795: ybhG - hypothetical protein (NCBI), at 828,197 to 829,195
ybhG
b0796: ybiH - putative transcriptional regulator (VIMSS), at 829,195 to 829,866
ybiH
b0797: rhlE - RNA helicase (NCBI), at 830,095 to 831,459
rhlE
b0798: ybiA - hypothetical protein (NCBI), at 831,691 to 832,173
ybiA
b0799: dinG - ATP-dependent DNA helicase (NCBI), at 832,293 to 834,443
dinG
Position (kb)
830
831
832 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 829.295 kb on - strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.535 kb on - strand, within ybiH at 829.598 kb on + strand, within ybiH at 829.679 kb on + strand, within ybiH at 829.841 kb on - strand at 829.841 kb on - strand at 829.845 kb on - strand at 829.858 kb on + strand at 829.996 kb on + strand at 830.051 kb on + strand at 830.059 kb on + strand at 830.059 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.146 kb on + strand at 830.156 kb on + strand at 830.159 kb on - strand at 830.176 kb on - strand at 830.182 kb on + strand at 830.182 kb on + strand at 830.192 kb on - strand at 830.249 kb on - strand, within rhlE at 830.277 kb on - strand, within rhlE at 830.277 kb on - strand, within rhlE at 830.333 kb on + strand, within rhlE at 830.333 kb on + strand, within rhlE at 830.335 kb on - strand, within rhlE at 830.335 kb on - strand, within rhlE at 830.341 kb on - strand, within rhlE at 830.390 kb on + strand, within rhlE at 830.531 kb on + strand, within rhlE at 830.836 kb on + strand, within rhlE at 830.850 kb on - strand, within rhlE at 830.860 kb on - strand, within rhlE at 830.860 kb on - strand, within rhlE at 831.483 kb on + strand at 831.535 kb on - strand at 831.542 kb on - strand at 831.542 kb on - strand at 831.679 kb on + strand at 831.679 kb on + strand at 831.733 kb on - strand at 831.733 kb on - strand at 831.752 kb on + strand, within ybiA at 831.752 kb on + strand, within ybiA at 831.942 kb on - strand, within ybiA at 832.127 kb on + strand at 832.127 kb on + strand at 832.158 kb on - strand at 832.250 kb on + strand at 832.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 829,295 - ybiH b0796 0.15 +1.1 829,360 + ybiH b0796 0.25 +0.8 829,360 + ybiH b0796 0.25 +1.5 829,535 - ybiH b0796 0.51 +1.0 829,598 + ybiH b0796 0.60 +0.0 829,679 + ybiH b0796 0.72 -0.9 829,841 - +0.2 829,841 - -1.2 829,845 - +0.4 829,858 + -2.4 829,996 + -0.4 830,051 + -0.5 830,059 + +0.2 830,059 + +0.2 830,123 + +0.7 830,123 + -0.2 830,123 + -0.6 830,146 + -0.3 830,156 + -0.9 830,159 - -0.5 830,176 - -0.6 830,182 + -1.9 830,182 + +0.9 830,192 - +0.2 830,249 - rhlE b0797 0.11 -2.8 830,277 - rhlE b0797 0.13 -0.4 830,277 - rhlE b0797 0.13 -0.6 830,333 + rhlE b0797 0.17 -1.0 830,333 + rhlE b0797 0.17 -1.1 830,335 - rhlE b0797 0.18 -1.9 830,335 - rhlE b0797 0.18 +0.4 830,341 - rhlE b0797 0.18 -0.7 830,390 + rhlE b0797 0.22 -1.6 830,531 + rhlE b0797 0.32 +0.2 830,836 + rhlE b0797 0.54 -0.9 830,850 - rhlE b0797 0.55 -0.3 830,860 - rhlE b0797 0.56 +0.2 830,860 - rhlE b0797 0.56 -0.5 831,483 + +0.2 831,535 - -0.6 831,542 - +0.0 831,542 - +0.2 831,679 + -0.5 831,679 + +1.1 831,733 - +0.8 831,733 - +1.1 831,752 + ybiA b0798 0.13 +1.5 831,752 + ybiA b0798 0.13 -2.5 831,942 - ybiA b0798 0.52 +0.3 832,127 + -0.1 832,127 + -2.6 832,158 - +0.3 832,250 + -0.1 832,353 - +0.1
Or see this region's nucleotide sequence