Experiment: Ying_Others16 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybfD and ybgA are separated by 147 nucleotides ybgA and phr overlap by 4 nucleotides
b0706: ybfD - hypothetical protein (NCBI), at 737,315 to 738,076
ybfD
b0707: ybgA - hypothetical protein (NCBI), at 738,224 to 738,733
ybgA
b0708: phr - deoxyribodipyrimidine photolyase, FAD-binding (NCBI), at 738,730 to 740,148
phr
Position (kb) 738
739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 737.562 kb on - strand, within ybfD at 737.613 kb on - strand, within ybfD at 737.616 kb on - strand, within ybfD at 737.616 kb on - strand, within ybfD at 737.693 kb on - strand, within ybfD at 737.703 kb on - strand, within ybfD at 737.705 kb on - strand, within ybfD at 737.767 kb on + strand, within ybfD at 737.777 kb on + strand, within ybfD at 737.977 kb on - strand, within ybfD at 737.979 kb on - strand, within ybfD at 738.012 kb on - strand at 738.032 kb on - strand at 738.120 kb on - strand at 738.199 kb on - strand at 738.200 kb on + strand at 738.200 kb on + strand at 738.208 kb on - strand at 738.208 kb on - strand at 738.211 kb on + strand at 738.251 kb on + strand at 738.252 kb on + strand at 738.392 kb on - strand, within ybgA at 738.392 kb on - strand, within ybgA at 738.435 kb on + strand, within ybgA at 738.443 kb on - strand, within ybgA at 738.531 kb on - strand, within ybgA at 738.710 kb on - strand at 738.717 kb on + strand at 738.717 kb on + strand at 738.759 kb on + strand at 738.787 kb on - strand at 738.831 kb on + strand at 738.831 kb on + strand at 738.831 kb on + strand at 738.831 kb on + strand at 738.837 kb on + strand at 738.844 kb on - strand at 738.844 kb on - strand at 738.844 kb on - strand at 739.092 kb on + strand, within phr at 739.122 kb on - strand, within phr at 739.124 kb on + strand, within phr at 739.322 kb on - strand, within phr at 739.415 kb on + strand, within phr at 739.415 kb on + strand, within phr at 739.475 kb on - strand, within phr at 739.648 kb on + strand, within phr at 739.648 kb on + strand, within phr at 739.648 kb on - strand, within phr at 739.648 kb on - strand, within phr at 739.720 kb on + strand, within phr
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 2 remove 737,562 - ybfD b0706 0.32 +3.1 737,613 - ybfD b0706 0.39 +0.5 737,616 - ybfD b0706 0.40 -0.8 737,616 - ybfD b0706 0.40 +3.1 737,693 - ybfD b0706 0.50 +0.6 737,703 - ybfD b0706 0.51 +0.8 737,705 - ybfD b0706 0.51 +2.1 737,767 + ybfD b0706 0.59 +1.7 737,777 + ybfD b0706 0.61 +1.5 737,977 - ybfD b0706 0.87 -1.3 737,979 - ybfD b0706 0.87 +0.8 738,012 - -1.2 738,032 - +3.6 738,120 - +0.8 738,199 - +1.7 738,200 + +0.3 738,200 + -0.7 738,208 - +0.7 738,208 - -2.0 738,211 + -2.3 738,251 + +2.1 738,252 + +1.3 738,392 - ybgA b0707 0.33 +0.3 738,392 - ybgA b0707 0.33 +1.9 738,435 + ybgA b0707 0.41 -0.9 738,443 - ybgA b0707 0.43 +1.8 738,531 - ybgA b0707 0.60 +1.2 738,710 - -0.4 738,717 + -2.7 738,717 + -0.8 738,759 + -0.7 738,787 - -3.5 738,831 + +0.2 738,831 + +0.3 738,831 + -0.8 738,831 + +1.2 738,837 + +0.5 738,844 - +0.7 738,844 - +0.4 738,844 - +0.1 739,092 + phr b0708 0.26 -2.0 739,122 - phr b0708 0.28 +0.0 739,124 + phr b0708 0.28 +1.1 739,322 - phr b0708 0.42 -2.1 739,415 + phr b0708 0.48 +0.3 739,415 + phr b0708 0.48 +0.7 739,475 - phr b0708 0.53 -0.3 739,648 + phr b0708 0.65 +0.1 739,648 + phr b0708 0.65 -0.7 739,648 - phr b0708 0.65 +0.2 739,648 - phr b0708 0.65 -0.3 739,720 + phr b0708 0.70 +1.4
Or see this region's nucleotide sequence