Strain Fitness in Escherichia coli BW25113 around b3706

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
3,884,716	+				-1.7
3,884,754	+				-1.6
3,884,777	+				+0.1
3,884,777	+				-1.0
3,884,817	-				-0.1
3,884,817	-				-0.3
3,884,817	-				+0.3
3,884,855	-				+0.6
3,884,855	-				-0.0
3,884,869	+				-1.1
3,884,869	+				+3.8
3,884,869	+				+2.9
3,884,869	+				+2.0
3,884,879	+				+2.0
3,884,883	-				-1.0
3,884,888	-				+1.0
3,884,897	-				-0.5
3,884,903	+				+2.1
3,884,937	-				+0.4
3,884,961	+				+0.9
3,884,961	+				+0.8
3,885,010	+	trmE	b3706	0.12	+1.9
3,885,014	+	trmE	b3706	0.12	-0.5
3,885,041	-	trmE	b3706	0.14	+1.2
3,885,051	-	trmE	b3706	0.15	+1.5
3,885,066	-	trmE	b3706	0.16	+1.6
3,885,091	+	trmE	b3706	0.18	+2.1
3,885,099	-	trmE	b3706	0.18	+2.1
3,885,129	+	trmE	b3706	0.20	-0.9
3,885,181	-	trmE	b3706	0.24	+0.6
3,885,181	-	trmE	b3706	0.24	+4.0
3,885,342	-	trmE	b3706	0.36	+2.2
3,885,342	-	trmE	b3706	0.36	+0.6
3,885,342	-	trmE	b3706	0.36	+0.6
3,885,400	-	trmE	b3706	0.40	+4.8
3,885,461	+	trmE	b3706	0.45	+0.1
3,885,480	-	trmE	b3706	0.46	+1.8
3,885,482	-	trmE	b3706	0.46	+3.4
3,885,490	+	trmE	b3706	0.47	+0.8
3,885,522	+	trmE	b3706	0.49	+1.7
3,885,689	+	trmE	b3706	0.61	+4.0
3,885,758	-	trmE	b3706	0.66	+1.4
3,885,758	-	trmE	b3706	0.66	+0.8
3,885,793	-	trmE	b3706	0.69	-2.5
3,885,887	+	trmE	b3706	0.76	+4.4
3,885,912	+	trmE	b3706	0.78	+2.9
3,885,929	+	trmE	b3706	0.79	+1.4
3,885,929	+	trmE	b3706	0.79	+2.1
3,885,944	+	trmE	b3706	0.80	+0.8
3,885,962	+	trmE	b3706	0.81	+1.4
3,885,962	+	trmE	b3706	0.81	+3.6
3,885,987	-	trmE	b3706	0.83	+1.4
3,886,006	+	trmE	b3706	0.85	+2.0
3,886,033	-	trmE	b3706	0.87	-0.2
3,886,033	-	trmE	b3706	0.87	+4.1
3,886,072	+	trmE	b3706	0.89	+1.7
3,886,086	+				+0.6
3,886,086	-				+1.4
3,886,094	+				+1.4
3,886,197	+				+2.5
3,886,200	+				+2.4
3,886,200	+				+3.4
3,886,200	+				-0.1
3,886,202	+				+2.4
3,886,207	+				+0.5
3,886,210	+				-0.5
3,886,233	+				-0.1
3,886,233	+				+0.4
3,886,237	-				-0.4
3,886,243	+				-0.9
3,886,257	+				+0.7
3,886,258	+				+0.8
3,886,258	+				-3.9
3,886,258	+				-1.0
3,886,263	+				+4.3
3,886,268	+				+0.1
3,886,273	+				-0.1
3,886,273	+				+0.8
3,886,373	-				+1.1
3,886,416	+				+2.4
3,886,419	+				+0.1
3,886,423	+				-0.7
3,886,440	+				-0.1
3,886,440	+				-0.8
3,886,471	+	tnaC	b3707	0.17	+2.4
3,886,526	+				+1.0
3,886,537	+				+0.2
3,886,539	+				-0.3
3,886,541	+				+0.3
3,886,541	+				-0.2
3,886,541	+				-0.7
3,886,541	+				-0.2
3,886,541	+				+0.1
3,886,541	+				-1.8
3,886,541	+				-0.9
3,886,541	+				-1.1
3,886,541	+				+0.3
3,886,541	+				-0.3
3,886,541	+				+1.3
3,886,541	+				+0.5
3,886,541	+				-0.3
3,886,541	+				-2.4
3,886,541	+				+0.3
3,886,541	+				+0.1
3,886,541	+				-2.7
3,886,541	+				+0.2
3,886,541	+				-0.1
3,886,541	+				-0.2
3,886,541	+				-0.1
3,886,541	+				-0.1
3,886,541	+				+0.4
3,886,547	+				-0.2
3,886,547	+				+0.4
3,886,547	+				-1.0
3,886,549	+				-0.5
3,886,552	+				-1.0
3,886,572	+				-0.3
3,886,573	+				-0.3
3,886,599	+				-1.0
3,886,662	+				+0.1
3,886,670	+				-1.6
3,886,713	+				-0.2
3,886,772	+				+3.2
3,886,780	-				+0.9
3,886,780	-				-0.2
3,886,780	-				+0.6
3,886,780	-				+0.2
3,886,781	-				-0.3
3,886,781	-				+0.2
3,886,788	+				+0.4
3,886,804	-				+0.5
3,886,810	-				+1.3
3,886,810	-				+0.5
3,886,813	-				+1.1
3,886,832	-				-0.1
3,886,837	-				+0.8
3,886,837	-				-1.7
3,886,846	+				+2.2
3,886,853	-				-1.0
3,886,853	-				-1.7
3,886,868	-				+0.8
3,886,868	-				-0.8
3,886,874	-				+0.7
3,886,874	-				+0.0
3,886,875	+				+1.9
3,886,875	+				+0.6
3,886,875	+				+1.1
3,886,875	+				+0.9
3,886,875	-				-0.1
3,886,878	-				+0.9
3,886,878	-				-0.5
3,886,914	-	tnaA	b3708	0.11	-0.3
3,886,924	-	tnaA	b3708	0.12	-0.3
3,886,924	-	tnaA	b3708	0.12	+0.4
3,886,924	-	tnaA	b3708	0.12	+1.4
3,886,931	+	tnaA	b3708	0.13	+0.2
3,886,935	-	tnaA	b3708	0.13	+0.7
3,886,935	-	tnaA	b3708	0.13	+0.3
3,886,938	-	tnaA	b3708	0.13	+0.3
3,886,938	-	tnaA	b3708	0.13	+1.5
3,886,938	-	tnaA	b3708	0.13	+1.1
3,886,939	-	tnaA	b3708	0.13	+1.4
3,886,939	-	tnaA	b3708	0.13	-2.3
3,886,943	+	tnaA	b3708	0.13	-0.9
3,886,943	-	tnaA	b3708	0.13	-3.3
3,886,946	-	tnaA	b3708	0.14	-1.0
3,886,946	-				+0.4
3,886,952	-	tnaA	b3708	0.14	+0.7
3,886,952	-	tnaA	b3708	0.14	+0.0
3,886,969	+	tnaA	b3708	0.15	-0.6
3,886,972	-	tnaA	b3708	0.15	-1.3
3,886,977	-	tnaA	b3708	0.16	-0.4
3,886,984	+	tnaA	b3708	0.16	+0.2
3,886,988	+	tnaA	b3708	0.17	-0.4
3,886,990	-	tnaA	b3708	0.17	+1.0
3,886,990	-	tnaA	b3708	0.17	+0.0
3,886,994	-	tnaA	b3708	0.17	-1.2
3,886,994	-	tnaA	b3708	0.17	+1.4
3,886,999	+	tnaA	b3708	0.17	-0.1
3,887,032	+	tnaA	b3708	0.20	-0.1
3,887,039	+	tnaA	b3708	0.20	-0.6
3,887,039	-	tnaA	b3708	0.20	-0.6
3,887,039	-	tnaA	b3708	0.20	+0.4
3,887,039	-	tnaA	b3708	0.20	+0.4
3,887,039	-	tnaA	b3708	0.20	-0.6
3,887,040	-	tnaA	b3708	0.20	-3.2
3,887,040	-	tnaA	b3708	0.20	-2.8
3,887,045	+	tnaA	b3708	0.21	-1.3
3,887,066	-	tnaA	b3708	0.22	+0.6
3,887,076	-	tnaA	b3708	0.23	+1.3
3,887,083	-	tnaA	b3708	0.23	+1.3
3,887,083	-	tnaA	b3708	0.23	+1.0
3,887,116	+	tnaA	b3708	0.26	-0.6
3,887,116	+	tnaA	b3708	0.26	+0.3
3,887,175	-	tnaA	b3708	0.30	+1.0
3,887,190	+	tnaA	b3708	0.31	+0.4
3,887,190	+	tnaA	b3708	0.31	-0.3
3,887,192	+	tnaA	b3708	0.31	+0.8
3,887,192	+	tnaA	b3708	0.31	+0.5
3,887,192	+	tnaA	b3708	0.31	+0.0
3,887,192	-	tnaA	b3708	0.31	-0.5
3,887,197	+	tnaA	b3708	0.31	+0.5
3,887,197	+	tnaA	b3708	0.31	-0.5
3,887,198	-	tnaA	b3708	0.31	+1.6
3,887,200	+	tnaA	b3708	0.32	+1.2