Strain Fitness in Escherichia coli BW25113 around b3442

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
3,578,889	-				-1.0
3,578,901	+				+0.7
3,578,974	+	ryhB	b4451	0.27	-1.2
3,578,974	+	ryhB	b4451	0.27	+0.6
3,578,993	+	ryhB	b4451	0.48	+0.0
3,579,141	-				-3.1
3,579,142	+				+0.0
3,579,173	+				-0.2
3,579,173	+				-1.6
3,579,196	+				+2.9
3,579,217	+	yhhY	b3441	0.11	-0.1
3,579,243	-	yhhY	b3441	0.17	-3.0
3,579,243	-	yhhY	b3441	0.17	+1.4
3,579,249	+	yhhY	b3441	0.18	-1.5
3,579,249	+	yhhY	b3441	0.18	+2.0
3,579,259	-	yhhY	b3441	0.20	-1.4
3,579,270	-	yhhY	b3441	0.22	-0.4
3,579,285	-	yhhY	b3441	0.25	-1.0
3,579,330	+	yhhY	b3441	0.35	+0.7
3,579,344	+	yhhY	b3441	0.37	+0.3
3,579,347	-	yhhY	b3441	0.38	+0.5
3,579,347	-	yhhY	b3441	0.38	+1.6
3,579,368	-	yhhY	b3441	0.42	-4.5
3,579,374	-	yhhY	b3441	0.44	+0.5
3,579,376	-	yhhY	b3441	0.44	-1.1
3,579,420	-	yhhY	b3441	0.53	-1.1
3,579,420	-	yhhY	b3441	0.53	+1.3
3,579,422	-	yhhY	b3441	0.53	+0.0
3,579,422	-	yhhY	b3441	0.53	-0.7
3,579,423	+	yhhY	b3441	0.54	+0.3
3,579,450	+	yhhY	b3441	0.59	-0.4
3,579,452	+	yhhY	b3441	0.60	-0.3
3,579,457	+	yhhY	b3441	0.61	-0.1
3,579,470	+	yhhY	b3441	0.63	+4.5
3,579,470	+	yhhY	b3441	0.63	+0.2
3,579,479	+	yhhY	b3441	0.65	-1.3
3,579,479	+	yhhY	b3441	0.65	-1.8
3,579,490	+	yhhY	b3441	0.67	-0.1
3,579,490	+	yhhY	b3441	0.67	-0.1
3,579,490	+	yhhY	b3441	0.67	-1.0
3,579,494	-	yhhY	b3441	0.68	+1.0
3,579,494	-	yhhY	b3441	0.68	+2.1
3,579,495	+	yhhY	b3441	0.68	-0.3
3,579,501	+	yhhY	b3441	0.70	-3.3
3,579,504	+	yhhY	b3441	0.70	-3.1
3,579,504	+	yhhY	b3441	0.70	+0.1
3,579,505	+	yhhY	b3441	0.70	+0.8
3,579,505	+	yhhY	b3441	0.70	-2.3
3,579,505	+	yhhY	b3441	0.70	+0.4
3,579,505	+	yhhY	b3441	0.70	-0.9
3,579,510	+	yhhY	b3441	0.71	-0.5
3,579,514	+	yhhY	b3441	0.72	+1.6
3,579,580	+	yhhY	b3441	0.86	+1.0
3,579,580	+	yhhY	b3441	0.86	-2.9
3,579,581	+	yhhY	b3441	0.86	+0.7
3,579,582	+	yhhY	b3441	0.86	+2.1
3,579,582	+				+2.8
3,579,582	+	yhhY	b3441	0.86	-2.6
3,579,584	+	yhhY	b3441	0.87	-0.5
3,579,584	+	yhhY	b3441	0.87	-1.8
3,579,584	+	yhhY	b3441	0.87	-1.1
3,579,584	+	yhhY	b3441	0.87	+0.5
3,579,584	+	yhhY	b3441	0.87	+0.1
3,579,584	+	yhhY	b3441	0.87	-0.5
3,579,584	+	yhhY	b3441	0.87	-0.4
3,579,589	+	yhhY	b3441	0.88	-0.2
3,579,589	+	yhhY	b3441	0.88	+1.3
3,579,589	+	yhhY	b3441	0.88	+0.2
3,579,591	+	yhhY	b3441	0.88	-0.8
3,579,591	+	yhhY	b3441	0.88	-0.4
3,579,592	+	yhhY	b3441	0.88	-0.4
3,579,592	+	yhhY	b3441	0.88	+0.1
3,579,601	+				-1.8
3,579,606	+				-0.6
3,579,618	+				-0.3
3,579,618	+				-3.5
3,579,625	+				+0.4
3,579,625	+				-0.6
3,579,625	+				-2.3
3,579,625	+				-1.0
3,579,625	+				+0.9
3,579,625	+				+0.3
3,579,625	+				-0.3
3,579,627	+				+1.0
3,579,627	+				+0.5
3,579,630	+				-1.1
3,579,644	+				-1.1
3,579,644	+				-2.7
3,579,644	+				-0.1
3,579,644	+				-1.4
3,579,646	+				-0.7
3,579,673	+				+0.2
3,579,673	+				-0.8
3,579,686	+				-0.3
3,579,896	-				+3.3
3,579,945	-				+3.3
3,580,425	-	yhhZ	b3442	0.46	+3.3
3,580,473	+	yhhZ	b3442	0.50	+3.3
3,581,376	-	yrhA	b3443	0.83	+0.6
3,581,399	-	yrhA	b3443	0.89	-2.1
3,581,399	-	yrhA	b3443	0.89	-0.8
3,581,402	+	yrhA	b3443	0.90	+2.3
3,581,410	-				+2.3
3,581,452	-				-0.3
3,581,509	-				-1.2