Strain Fitness in Escherichia coli BW25113 around b2216

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
2,310,531	+	ompC	b2215	0.78	+0.7
2,310,532	+	ompC	b2215	0.78	+0.7
2,310,538	-	ompC	b2215	0.79	+1.3
2,310,538	-	ompC	b2215	0.79	+0.0
2,310,562	-	ompC	b2215	0.81	+1.3
2,310,599	+	ompC	b2215	0.84	+0.6
2,310,601	+	ompC	b2215	0.85	+1.4
2,310,602	+	ompC	b2215	0.85	+0.1
2,310,602	+	ompC	b2215	0.85	-0.9
2,310,602	+	ompC	b2215	0.85	+0.8
2,310,602	+	ompC	b2215	0.85	+1.0
2,310,607	+	ompC	b2215	0.85	+1.4
2,310,607	+	ompC	b2215	0.85	+2.0
2,310,608	-	ompC	b2215	0.85	+0.9
2,310,610	-	ompC	b2215	0.85	+1.0
2,310,615	-	ompC	b2215	0.86	+0.9
2,310,629	-	ompC	b2215	0.87	+0.1
2,310,672	+				+0.7
2,310,680	-				-0.6
2,310,680	-				+0.8
2,310,700	+				+0.8
2,310,700	+				-1.7
2,310,721	+				+1.3
2,310,725	+				+1.0
2,310,734	-				+1.2
2,310,736	+				-0.5
2,310,737	+				+0.4
2,310,743	-				+1.2
2,310,746	+				-0.7
2,310,746	+				+0.9
2,310,748	+				-1.6
2,310,765	-				+1.0
2,310,765	-				-0.5
2,310,787	-				-0.0
2,310,787	-				-0.6
2,310,821	+				-0.1
2,310,824	+				+0.9
2,310,824	-				+0.4
2,310,824	-				+0.2
2,310,824	-				-0.3
2,310,824	-				-0.6
2,310,826	+				-0.0
2,310,829	-				+1.0
2,310,834	+				+3.3
2,310,835	+				-0.8
2,310,835	+				+1.5
2,310,842	-				+0.0
2,310,843	-				+0.2
2,310,883	-				+1.5
2,310,888	-				+0.4
2,310,889	+				+1.7
2,310,928	+				-1.7
2,311,091	+				+0.7
2,311,204	+				+0.4
2,311,233	+				+2.5
2,311,245	+				-0.2
2,311,250	-				-0.3
2,311,342	-				-2.8
2,311,347	+				+2.1
2,311,347	+				+0.8
2,311,347	+				-1.6
2,311,399	-				-0.4
2,311,409	-				-0.6
2,311,421	+				-0.5
2,311,428	-				-0.8
2,311,428	-				+0.5
2,311,434	-				-2.2
2,311,435	-				-0.2
2,311,438	-				-0.5
2,311,438	-				+1.2
2,311,453	-				+0.0
2,311,453	-				+0.4
2,311,453	-				-2.2
2,311,457	+				-2.2
2,311,457	+				+0.5
2,311,458	+				+1.1
2,311,459	+				+0.4
2,311,459	+				-1.4
2,311,459	+				-0.5
2,311,467	-				+2.0
2,311,467	-				+1.5
2,311,467	-				+1.6
2,311,467	-				+1.2
2,311,467	-				+0.8
2,311,467	-				+1.1
2,311,467	-				+0.3
2,311,467	-				+0.8
2,311,478	-				+1.0
2,311,552	+				+3.6
2,311,552	+				+2.6
2,311,586	+				+4.4
2,311,613	+				+3.2
2,311,613	+				+5.4
2,311,613	-				+4.0
2,311,687	+				+3.5
2,311,687	+				+4.8
2,311,737	-				+2.1
2,311,785	-	rcsD	b2216	0.10	+2.7
2,311,962	+	rcsD	b2216	0.17	+4.3
2,311,962	+	rcsD	b2216	0.17	+4.4
2,311,970	+	rcsD	b2216	0.17	+3.6
2,311,980	+	rcsD	b2216	0.18	+3.8
2,311,987	+	rcsD	b2216	0.18	+2.9
2,311,990	-	rcsD	b2216	0.18	+0.7
2,312,227	+	rcsD	b2216	0.27	+4.1
2,312,227	+	rcsD	b2216	0.27	+4.2
2,312,240	-	rcsD	b2216	0.27	+4.2
2,312,240	-	rcsD	b2216	0.27	+4.3
2,312,318	+	rcsD	b2216	0.30	+3.5
2,312,329	-	rcsD	b2216	0.31	+0.5
2,312,416	-	rcsD	b2216	0.34	+2.9
2,312,416	-	rcsD	b2216	0.34	-0.5
2,312,644	+	rcsD	b2216	0.42	+5.0
2,312,644	+	rcsD	b2216	0.42	+4.8
2,312,697	+	rcsD	b2216	0.44	+3.5
2,312,716	-	rcsD	b2216	0.45	+3.9
2,312,716	-	rcsD	b2216	0.45	+3.5
2,312,765	-	rcsD	b2216	0.47	+5.1
2,312,873	-	rcsD	b2216	0.51	+4.5
2,312,879	-	rcsD	b2216	0.51	+4.5
2,312,879	-	rcsD	b2216	0.51	+4.3
2,312,923	+	rcsD	b2216	0.53	+4.0
2,312,923	+	rcsD	b2216	0.53	+2.7
2,312,943	+	rcsD	b2216	0.54	+3.0
2,312,953	-	rcsD	b2216	0.54	+1.8
2,313,082	+	rcsD	b2216	0.59	+3.0
2,313,099	+	rcsD	b2216	0.59	+5.0
2,313,222	-	rcsD	b2216	0.64	+1.3
2,313,297	+	rcsD	b2216	0.67	+4.8
2,313,307	+	rcsD	b2216	0.67	+4.9
2,313,338	+	rcsD	b2216	0.68	+4.5
2,313,349	+	rcsD	b2216	0.69	+5.0
2,313,349	+	rcsD	b2216	0.69	+4.8
2,313,349	-	rcsD	b2216	0.69	-0.7
2,313,422	-	rcsD	b2216	0.72	+3.2
2,313,518	+	rcsD	b2216	0.75	+4.8
2,313,521	-	rcsD	b2216	0.75	+2.1
2,313,521	-	rcsD	b2216	0.75	+2.0
2,313,525	+	rcsD	b2216	0.75	+5.4
2,313,525	+	rcsD	b2216	0.75	+5.0
2,313,590	-	rcsD	b2216	0.78	-2.0
2,313,598	+	rcsD	b2216	0.78	+4.8
2,313,671	-	rcsD	b2216	0.81	+1.3
2,313,741	-	rcsD	b2216	0.83	-0.4
2,313,750	-	rcsD	b2216	0.84	-1.2
2,313,807	+	rcsD	b2216	0.86	+5.5
2,313,959	+				-1.0
2,314,038	+				+1.5
2,314,038	-				+0.1
2,314,102	+				+0.1
2,314,202	-				-1.7
2,314,311	+	rcsB	b2217	0.17	-1.0
2,314,319	+	rcsB	b2217	0.18	-1.5
2,314,323	+	rcsB	b2217	0.19	-0.4
2,314,362	-	rcsB	b2217	0.25	-1.8
2,314,362	-	rcsB	b2217	0.25	-1.0
2,314,439	-	rcsB	b2217	0.37	-0.5
2,314,439	-	rcsB	b2217	0.37	-0.5
2,314,490	+	rcsB	b2217	0.45	-1.3
2,314,490	+	rcsB	b2217	0.45	-1.1
2,314,565	+	rcsB	b2217	0.56	-0.6
2,314,599	+	rcsB	b2217	0.61	+0.3
2,314,773	+	rcsB	b2217	0.88	-0.8
2,314,812	-				-0.5
2,315,032	-				-0.1
2,315,045	-				-1.1
2,315,139	+				+4.4