Strain Fitness in Escherichia coli BW25113 around b1542

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,626,955	+	ydfH	b1540	0.84	+1.2
1,627,253	-				-1.4
1,627,424	-				-1.9
1,627,446	+				-0.2
1,627,454	-				+0.7
1,627,556	-				+0.7
1,627,675	-	ydfI	b1542	0.14	-0.1
1,627,873	+	ydfI	b1542	0.27	+0.2
1,628,496	+	ydfI	b1542	0.70	+2.0
1,628,633	+	ydfI	b1542	0.79	+3.9
1,628,633	+	ydfI	b1542	0.79	+2.7
1,628,637	-	ydfI	b1542	0.79	+1.2
1,628,678	+	ydfI	b1542	0.82	+0.8
1,628,757	+	ydfI	b1542	0.88	+1.3
1,628,862	+				+2.6
1,629,011	-				+0.3
1,629,015	-				-0.3
1,629,024	-				-0.2
1,629,024	-				-0.1
1,629,029	-				-0.1
1,629,029	-				+0.9
1,629,049	-				-0.7
1,629,053	+				+2.8
1,629,054	-				+0.2
1,629,054	-				+0.8
1,629,060	-				-1.7
1,629,062	-				-0.6
1,629,091	-				+0.2
1,629,145	-				-0.3
1,629,145	-				+0.2
1,629,302	-	ydfJ	b4600	0.21	+0.7
1,629,312	-	ydfJ	b4600	0.22	-1.6
1,629,312	-	ydfJ	b4600	0.22	-0.2
1,629,312	-	ydfJ	b4600	0.22	+0.2
1,629,321	-	ydfJ	b4600	0.23	+0.2
1,629,434	-	ydfJ	b4600	0.32	+1.6
1,629,434	-	ydfJ	b4600	0.32	+0.3
1,629,460	-	ydfJ	b4600	0.34	-0.2
1,629,491	-	ydfJ	b4600	0.36	-0.2
1,629,583	-	ydfJ	b4600	0.43	-0.1
1,629,723	+	ydfJ	b4600	0.54	+0.8
1,629,793	+	ydfJ	b4600	0.60	+2.8
1,629,885	+	ydfJ	b4600	0.67	-0.5
1,629,902	+	ydfJ	b4600	0.68	-0.5