Strain Fitness in Escherichia coli BW25113 around b1535

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,620,034	-	ydeE	b1534	0.57	-0.5
1,620,095	+	ydeE	b1534	0.62	+0.5
1,620,183	+	ydeE	b1534	0.70	-0.9
1,620,302	-	ydeE	b1534	0.80	+0.5
1,620,316	+	ydeE	b1534	0.81	-0.0
1,620,372	+	ydeE	b1534	0.86	-2.4
1,620,372	+	ydeE	b1534	0.86	+0.4
1,620,421	+	ydeE	b1534	0.90	-0.2
1,620,424	-	ydeE	b1534	0.90	-0.1
1,620,424	-	ydeE	b1534	0.90	+2.1
1,620,435	+				+0.7
1,620,435	+				+1.0
1,620,503	+				+0.8
1,620,522	+				+0.3
1,620,581	+				+1.2
1,620,638	+				-0.1
1,620,638	+				+0.3
1,620,638	+				+1.1
1,620,651	+				-2.8
1,620,772	-				+0.8
1,620,779	+				-1.0
1,620,784	+				-2.3
1,620,784	+				+0.3
1,620,800	+				-0.0
1,620,800	+				+0.9
1,620,807	+				-1.7
1,620,812	+				+1.7
1,620,812	+				-0.2
1,620,874	-	mgrR	b4698	0.34	+0.3
1,620,874	-	mgrR	b4698	0.34	-2.1
1,620,879	-	mgrR	b4698	0.39	+1.1
1,620,926	-	mgrR	b4698	0.87	-0.8
1,620,946	-				-0.5
1,620,978	-				-0.3
1,620,990	-				-4.3
1,621,058	-				+0.5
1,621,058	-				+0.3
1,621,084	-	ydeH	b1535	0.11	-1.0
1,621,084	-	ydeH	b1535	0.11	+0.7
1,621,089	-	ydeH	b1535	0.12	-4.5
1,621,094	-	ydeH	b1535	0.12	-1.5
1,621,094	-	ydeH	b1535	0.12	+1.0
1,621,103	+	ydeH	b1535	0.13	-1.0
1,621,121	-	ydeH	b1535	0.15	+0.2
1,621,207	-	ydeH	b1535	0.25	-1.1
1,621,207	-	ydeH	b1535	0.25	-1.1
1,621,215	-	ydeH	b1535	0.26	-0.3
1,621,304	-	ydeH	b1535	0.36	-1.6
1,621,307	+	ydeH	b1535	0.36	+3.6
1,621,315	-	ydeH	b1535	0.37	+0.8
1,621,317	+	ydeH	b1535	0.37	+0.8
1,621,320	+	ydeH	b1535	0.38	+2.8
1,621,323	-	ydeH	b1535	0.38	-0.2
1,621,325	-	ydeH	b1535	0.38	+0.2
1,621,416	-	ydeH	b1535	0.48	+0.1
1,621,439	-	ydeH	b1535	0.51	-0.9
1,621,459	-	ydeH	b1535	0.53	+0.2
1,621,685	-	ydeH	b1535	0.79	-0.5
1,621,685	-	ydeH	b1535	0.79	-1.5
1,621,691	-	ydeH	b1535	0.79	-0.4
1,621,714	+	ydeH	b1535	0.82	-1.3
1,621,722	-	ydeH	b1535	0.83	-1.4
1,621,724	+	ydeH	b1535	0.83	+1.1
1,621,724	+	ydeH	b1535	0.83	+1.8
1,621,724	+	ydeH	b1535	0.83	-0.5
1,621,724	+	ydeH	b1535	0.83	-0.7
1,621,726	+	ydeH	b1535	0.83	-1.9
1,621,732	-	ydeH	b1535	0.84	+0.8
1,621,732	-	ydeH	b1535	0.84	+2.8
1,621,761	-	ydeH	b1535	0.87	+2.2
1,621,761	-	ydeH	b1535	0.87	-1.0
1,621,789	+				+2.8
1,621,799	+				+2.8
1,621,799	+				+1.2
1,621,799	+				+0.5
1,621,799	+				+1.2
1,621,803	+				+0.5
1,621,811	-				+2.8
1,621,813	-				+2.8
1,621,917	-				+1.8
1,621,961	+				+1.8
1,621,973	+				+0.2
1,622,143	-				-1.3
1,622,227	+	ydeI	b1536	0.25	+1.8
1,622,299	-	ydeI	b1536	0.43	-0.7
1,622,299	-	ydeI	b1536	0.43	-0.9
1,622,405	-	ydeI	b1536	0.70	+1.8
1,622,405	-	ydeI	b1536	0.70	+1.8
1,622,409	+	ydeI	b1536	0.71	+1.2
1,622,409	+	ydeI	b1536	0.71	+1.2
1,622,420	+	ydeI	b1536	0.74	+1.2
1,622,420	+	ydeI	b1536	0.74	+1.8
1,622,420	+	ydeI	b1536	0.74	+0.8
1,622,471	-	ydeI	b1536	0.87	+1.8
1,622,527	+				+1.8
1,622,774	-				+0.6
1,622,834	+				+2.8
1,622,835	-				-1.5
1,622,838	-				-1.2
1,622,868	+	ydeJ	b1537	0.14	+1.8
1,622,868	+	ydeJ	b1537	0.14	+2.8