Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yddE and narV are separated by 78 nucleotides narV and narW overlap by 4 nucleotides narW and narY overlap by 1 nucleotides
b1464: yddE - hypothetical protein (NCBI), at 1,532,989 to 1,533,882
yddE
b1465: narV - nitrate reductase 2 (NRZ), gamma subunit (NCBI), at 1,533,961 to 1,534,641
narV
b1466: narW - nitrate reductase 2 (NRZ), delta subunit (assembly subunit) (NCBI), at 1,534,638 to 1,535,333
narW
b1467: narY - nitrate reductase 2 (NRZ), beta subunit (NCBI), at 1,535,333 to 1,536,877
narY
Position (kb)
1534
1535
1536 Strain fitness (log2 ratio)
-2
-1
0
1 at 1533.643 kb on - strand, within yddE at 1533.650 kb on + strand, within yddE at 1533.735 kb on + strand, within yddE at 1533.892 kb on + strand at 1533.947 kb on - strand at 1534.325 kb on - strand, within narV at 1534.336 kb on + strand, within narV at 1534.625 kb on + strand at 1534.659 kb on + strand at 1534.659 kb on + strand at 1534.776 kb on + strand, within narW at 1535.009 kb on + strand, within narW at 1535.035 kb on - strand, within narW at 1535.064 kb on - strand, within narW at 1535.075 kb on + strand, within narW at 1535.172 kb on - strand, within narW at 1535.310 kb on + strand at 1535.352 kb on - strand at 1535.352 kb on - strand at 1535.359 kb on + strand at 1535.563 kb on + strand, within narY at 1535.583 kb on - strand, within narY at 1535.843 kb on - strand, within narY at 1535.885 kb on + strand, within narY at 1536.005 kb on - strand, within narY at 1536.005 kb on - strand, within narY at 1536.015 kb on - strand, within narY at 1536.054 kb on + strand, within narY at 1536.316 kb on - strand, within narY at 1536.316 kb on - strand, within narY at 1536.323 kb on + strand, within narY
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 1,533,643 - yddE b1464 0.73 -0.1 1,533,650 + yddE b1464 0.74 +0.1 1,533,735 + yddE b1464 0.83 -0.4 1,533,892 + +0.8 1,533,947 - -0.1 1,534,325 - narV b1465 0.53 -0.6 1,534,336 + narV b1465 0.55 +1.7 1,534,625 + +1.6 1,534,659 + -0.3 1,534,659 + +0.9 1,534,776 + narW b1466 0.20 +0.0 1,535,009 + narW b1466 0.53 +0.1 1,535,035 - narW b1466 0.57 +0.4 1,535,064 - narW b1466 0.61 +0.3 1,535,075 + narW b1466 0.63 +0.1 1,535,172 - narW b1466 0.77 -0.3 1,535,310 + -0.0 1,535,352 - +0.7 1,535,352 - -0.8 1,535,359 + -1.8 1,535,563 + narY b1467 0.15 +0.1 1,535,583 - narY b1467 0.16 -0.4 1,535,843 - narY b1467 0.33 +0.3 1,535,885 + narY b1467 0.36 -0.3 1,536,005 - narY b1467 0.43 -0.3 1,536,005 - narY b1467 0.43 +0.3 1,536,015 - narY b1467 0.44 -0.5 1,536,054 + narY b1467 0.47 +0.4 1,536,316 - narY b1467 0.64 -0.4 1,536,316 - narY b1467 0.64 +0.0 1,536,323 + narY b1467 0.64 +0.1
Or see this region's nucleotide sequence