Strain Fitness in Escherichia coli BW25113 around b1038

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
1,099,962	+				+4.6
1,099,987	-				+3.0
1,099,987	-				-0.7
1,100,096	-				+2.7
1,100,152	+				+5.0
1,100,152	+				+1.0
1,100,172	-	csgG	b1037	0.12	+4.3
1,100,172	-	csgG	b1037	0.12	+4.4
1,100,172	-	csgG	b1037	0.12	+4.1
1,100,221	-	csgG	b1037	0.18	+4.4
1,100,223	+	csgG	b1037	0.18	+4.6
1,100,223	+	csgG	b1037	0.18	+4.0
1,100,235	+	csgG	b1037	0.19	+4.8
1,100,249	-	csgG	b1037	0.21	+4.4
1,100,251	-	csgG	b1037	0.21	+4.6
1,100,265	-	csgG	b1037	0.23	+3.8
1,100,363	-	csgG	b1037	0.35	+4.5
1,100,410	-	csgG	b1037	0.40	+4.0
1,100,410	-	csgG	b1037	0.40	+4.1
1,100,521	-	csgG	b1037	0.54	+4.3
1,100,539	+	csgG	b1037	0.56	+4.6
1,100,560	+	csgG	b1037	0.58	+4.5
1,100,560	+	csgG	b1037	0.58	+4.0
1,100,661	+	csgG	b1037	0.70	+4.6
1,100,669	-	csgG	b1037	0.71	+4.3
1,100,669	-	csgG	b1037	0.71	+4.4
1,100,687	+	csgG	b1037	0.74	+4.2
1,100,687	+	csgG	b1037	0.74	+3.9
1,100,708	+	csgG	b1037	0.76	+4.6
1,100,805	+	csgG	b1037	0.88	+4.5
1,100,813	-	csgG	b1037	0.89	+4.7
1,100,848	-				+2.9
1,100,850	+				+4.3
1,100,861	+				+5.4
1,100,866	+				+4.7
1,100,866	+				+4.7
1,100,962	+				+4.2
1,100,969	+				+5.2
1,101,017	-	csgF	b1038	0.20	+2.9
1,101,018	+	csgF	b1038	0.20	+5.4
1,101,061	+	csgF	b1038	0.30	+4.1
1,101,144	+	csgF	b1038	0.50	+4.7
1,101,156	+	csgF	b1038	0.53	+4.5
1,101,176	+	csgF	b1038	0.58	+5.2
1,101,329	-				+2.9
1,101,414	-	csgE	b1039	0.10	+1.9
1,101,436	-	csgE	b1039	0.16	+3.9
1,101,442	-	csgE	b1039	0.17	+1.9
1,101,453	-	csgE	b1039	0.20	+2.4
1,101,547	-	csgE	b1039	0.44	+3.2
1,101,554	-	csgE	b1039	0.46	+3.2
1,101,568	-	csgE	b1039	0.49	+2.6
1,101,568	-	csgE	b1039	0.49	+2.9
1,101,568	-	csgE	b1039	0.49	+3.3
1,101,574	-	csgE	b1039	0.51	+3.1
1,101,584	-	csgE	b1039	0.54	+2.2
1,101,597	-	csgE	b1039	0.57	+2.3
1,101,597	-	csgE	b1039	0.57	+1.5
1,101,615	-	csgE	b1039	0.62	+2.1
1,101,615	-	csgE	b1039	0.62	+1.1
1,101,639	-	csgE	b1039	0.68	+2.2
1,101,655	-	csgE	b1039	0.72	+2.4
1,101,664	-	csgE	b1039	0.74	+2.9
1,101,667	+	csgE	b1039	0.75	+1.9
1,101,669	-	csgE	b1039	0.75	+2.1
1,101,678	-	csgE	b1039	0.78	+0.9
1,101,678	-	csgE	b1039	0.78	+1.6
1,101,685	-	csgE	b1039	0.79	+1.6
1,101,686	-	csgE	b1039	0.80	+2.1
1,101,686	-	csgE	b1039	0.80	+1.6
1,101,690	+	csgE	b1039	0.81	+2.9
1,101,698	-	csgE	b1039	0.83	+1.9
1,101,700	-	csgE	b1039	0.83	+2.5
1,101,700	-	csgE	b1039	0.83	+2.2
1,101,710	+	csgE	b1039	0.86	+3.9
1,101,712	-	csgE	b1039	0.86	-0.9
1,101,779	+				+1.9
1,101,799	-				+4.5
1,101,966	-	csgD	b1040	0.30	+5.3
1,101,973	+	csgD	b1040	0.31	+5.2
1,101,981	-	csgD	b1040	0.33	+2.9
1,101,995	+	csgD	b1040	0.35	+4.9
1,102,006	-	csgD	b1040	0.36	+5.8
1,102,028	+	csgD	b1040	0.40	+5.1
1,102,028	+	csgD	b1040	0.40	+5.7
1,102,060	-	csgD	b1040	0.45	+2.9
1,102,120	+	csgD	b1040	0.54	+6.1
1,102,334	-	csgD	b1040	0.87	+2.9
1,102,334	-	csgD	b1040	0.87	+2.9