Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cydC and cydD are separated by 0 nucleotides cydD and trxB are separated by 122 nucleotides
b0886: cydC - fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 926,697 to 928,418
cydC
b0887: cydD - fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 928,419 to 930,185
cydD
b0888: trxB - thioredoxin reductase, FAD/NAD(P)-binding (NCBI), at 930,308 to 931,273
trxB
Position (kb) 928
929
930
931 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 928.435 kb on - strand at 928.435 kb on - strand at 928.435 kb on - strand at 928.445 kb on + strand at 928.445 kb on + strand at 928.481 kb on - strand at 930.352 kb on + strand at 930.373 kb on - strand at 930.373 kb on - strand at 930.410 kb on + strand, within trxB at 930.456 kb on - strand, within trxB at 930.458 kb on + strand, within trxB at 930.554 kb on - strand, within trxB at 930.610 kb on - strand, within trxB at 930.612 kb on + strand, within trxB at 930.634 kb on - strand at 930.848 kb on - strand, within trxB at 930.848 kb on - strand, within trxB at 930.863 kb on + strand, within trxB at 930.913 kb on - strand, within trxB at 930.939 kb on + strand, within trxB at 931.019 kb on + strand, within trxB at 931.137 kb on - strand, within trxB
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 928,435 - -0.0 928,435 - +0.7 928,435 - -1.2 928,445 + +1.8 928,445 + -2.8 928,481 - +0.6 930,352 + -2.2 930,373 - -0.1 930,373 - -2.3 930,410 + trxB b0888 0.11 +0.4 930,456 - trxB b0888 0.15 +1.1 930,458 + trxB b0888 0.16 -1.3 930,554 - trxB b0888 0.25 +0.4 930,610 - trxB b0888 0.31 -1.3 930,612 + trxB b0888 0.31 -1.3 930,634 - -0.7 930,848 - trxB b0888 0.56 -0.4 930,848 - trxB b0888 0.56 -1.4 930,863 + trxB b0888 0.57 -0.7 930,913 - trxB b0888 0.63 -0.6 930,939 + trxB b0888 0.65 -2.8 931,019 + trxB b0888 0.74 -1.0 931,137 - trxB b0888 0.86 +1.3
Or see this region's nucleotide sequence