Experiment: Ying_Others16 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliB and yliC are separated by 17 nucleotides yliC and yliD are separated by 2 nucleotides
b0830: yliB - predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 868,634 to 870,172
yliB
b0831: yliC - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 870,190 to 871,110
yliC
b0832: yliD - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 871,113 to 872,024
yliD
Position (kb) 870
871
872 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 869.192 kb on - strand, within yliB at 869.437 kb on + strand, within yliB at 869.601 kb on + strand, within yliB at 869.614 kb on + strand, within yliB at 869.670 kb on + strand, within yliB at 869.681 kb on + strand, within yliB at 869.743 kb on - strand, within yliB at 869.748 kb on - strand, within yliB at 869.845 kb on + strand, within yliB at 869.853 kb on - strand, within yliB at 869.909 kb on + strand, within yliB at 870.102 kb on + strand at 870.136 kb on - strand at 870.209 kb on - strand at 870.209 kb on - strand at 870.274 kb on + strand at 870.347 kb on - strand, within yliC at 870.379 kb on - strand, within yliC at 870.411 kb on - strand, within yliC at 870.426 kb on + strand, within yliC at 870.590 kb on - strand, within yliC at 870.598 kb on - strand, within yliC at 870.796 kb on + strand, within yliC at 870.852 kb on - strand, within yliC at 870.883 kb on - strand, within yliC at 870.923 kb on + strand, within yliC at 871.104 kb on - strand at 871.104 kb on - strand at 871.111 kb on + strand at 871.111 kb on + strand at 871.168 kb on + strand at 871.168 kb on + strand at 871.188 kb on - strand at 871.363 kb on - strand, within yliD at 871.363 kb on - strand, within yliD at 871.368 kb on - strand, within yliD at 871.381 kb on + strand, within yliD at 871.381 kb on + strand, within yliD at 871.589 kb on + strand, within yliD at 871.678 kb on + strand, within yliD at 871.691 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.722 kb on - strand, within yliD at 871.722 kb on - strand, within yliD at 871.757 kb on + strand, within yliD at 871.757 kb on + strand, within yliD at 871.765 kb on - strand, within yliD at 871.765 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.857 kb on - strand, within yliD at 871.863 kb on + strand, within yliD at 871.864 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.877 kb on - strand, within yliD at 871.877 kb on - strand, within yliD at 871.881 kb on + strand, within yliD at 871.881 kb on + strand, within yliD at 871.890 kb on - strand, within yliD at 871.902 kb on + strand, within yliD at 871.986 kb on + strand at 871.986 kb on + strand at 871.987 kb on + strand at 871.987 kb on + strand at 872.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 2 remove 869,192 - yliB b0830 0.36 +0.7 869,437 + yliB b0830 0.52 -0.2 869,601 + yliB b0830 0.63 -0.8 869,614 + yliB b0830 0.64 +0.6 869,670 + yliB b0830 0.67 +0.4 869,681 + yliB b0830 0.68 -2.0 869,743 - yliB b0830 0.72 -0.8 869,748 - yliB b0830 0.72 +0.8 869,845 + yliB b0830 0.79 +0.6 869,853 - yliB b0830 0.79 +0.9 869,909 + yliB b0830 0.83 +0.3 870,102 + -1.0 870,136 - -0.9 870,209 - +0.7 870,209 - -0.5 870,274 + -1.2 870,347 - yliC b0831 0.17 +0.9 870,379 - yliC b0831 0.21 +0.6 870,411 - yliC b0831 0.24 +1.8 870,426 + yliC b0831 0.26 +0.8 870,590 - yliC b0831 0.43 -0.2 870,598 - yliC b0831 0.44 +0.0 870,796 + yliC b0831 0.66 +1.1 870,852 - yliC b0831 0.72 +0.6 870,883 - yliC b0831 0.75 +0.8 870,923 + yliC b0831 0.80 +0.3 871,104 - -0.6 871,104 - +3.3 871,111 + -0.7 871,111 + -0.9 871,168 + -2.2 871,168 + +1.3 871,188 - -0.5 871,363 - yliD b0832 0.27 +0.2 871,363 - yliD b0832 0.27 +1.0 871,368 - yliD b0832 0.28 -1.2 871,381 + yliD b0832 0.29 +0.7 871,381 + yliD b0832 0.29 +0.4 871,589 + yliD b0832 0.52 +0.1 871,678 + yliD b0832 0.62 +0.6 871,691 + yliD b0832 0.63 -0.6 871,714 + yliD b0832 0.66 +0.6 871,714 + yliD b0832 0.66 +0.2 871,722 - yliD b0832 0.67 +0.2 871,722 - yliD b0832 0.67 +2.3 871,757 + yliD b0832 0.71 -0.1 871,757 + yliD b0832 0.71 +0.9 871,765 - yliD b0832 0.71 +0.2 871,765 - yliD b0832 0.71 -0.7 871,779 - yliD b0832 0.73 -0.7 871,779 - yliD b0832 0.73 -1.3 871,779 - yliD b0832 0.73 -2.5 871,779 - yliD b0832 0.73 -1.5 871,794 - yliD b0832 0.75 +1.0 871,794 - yliD b0832 0.75 -1.0 871,857 - yliD b0832 0.82 -0.9 871,863 + yliD b0832 0.82 +1.0 871,864 + yliD b0832 0.82 +0.2 871,869 + yliD b0832 0.83 +0.7 871,869 + yliD b0832 0.83 +0.6 871,877 - yliD b0832 0.84 +1.6 871,877 - yliD b0832 0.84 -2.6 871,881 + yliD b0832 0.84 -1.9 871,881 + yliD b0832 0.84 -0.9 871,890 - yliD b0832 0.85 -1.5 871,902 + yliD b0832 0.87 +0.1 871,986 + +1.6 871,986 + -1.7 871,987 + +1.1 871,987 + -0.3 872,088 - +3.0
Or see this region's nucleotide sequence