Strain Fitness in Escherichia coli BW25113 around b0382

Experiment: Ying_Others16 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 2
399,659	-	ddlA	b0381	0.55	-0.7
399,707	-	ddlA	b0381	0.60	+0.8
399,727	+	ddlA	b0381	0.62	+0.8
399,727	+	ddlA	b0381	0.62	+1.3
399,787	+	ddlA	b0381	0.67	-2.8
399,824	+	ddlA	b0381	0.70	-3.0
399,916	+	ddlA	b0381	0.79	+1.1
399,933	+	ddlA	b0381	0.80	-0.3
399,948	+	ddlA	b0381	0.82	+1.4
399,948	+	ddlA	b0381	0.82	+0.9
400,092	+				-0.1
400,092	+				+1.1
400,093	+				+4.4
400,093	+				+0.8
400,168	+				-0.4
400,178	-				+0.2
400,240	+				-0.8
400,240	+				+0.3
400,251	+				-0.3
400,258	+				+1.1
400,263	+				-0.9
400,264	+				+1.3
400,282	-				-0.2
400,288	-				-0.9
400,373	+				-0.7
400,559	-				+4.7
400,561	+				-0.7
400,638	-	yaiB	b0382	0.11	+1.2
400,667	+	yaiB	b0382	0.22	+0.4
400,675	+	yaiB	b0382	0.25	+1.9
400,684	+	yaiB	b0382	0.28	+2.0
400,692	-	yaiB	b0382	0.31	+2.6
400,692	-	yaiB	b0382	0.31	-0.1
400,692	-	yaiB	b0382	0.31	+1.5
400,707	+	yaiB	b0382	0.37	+0.5
400,715	-	yaiB	b0382	0.40	+0.4
400,750	+	yaiB	b0382	0.54	+1.8
400,762	+	yaiB	b0382	0.58	+1.8
400,762	+	yaiB	b0382	0.58	+1.7
400,762	+	yaiB	b0382	0.58	+1.6
400,770	-	yaiB	b0382	0.61	+0.2
400,770	-	yaiB	b0382	0.61	+1.2
400,775	+	yaiB	b0382	0.63	+1.3
400,777	+	yaiB	b0382	0.64	+1.8
400,777	+	yaiB	b0382	0.64	+1.8
400,777	+	yaiB	b0382	0.64	+2.0
400,777	+	yaiB	b0382	0.64	-0.1
400,782	+	yaiB	b0382	0.66	+1.4
400,783	+	yaiB	b0382	0.66	+1.7
400,783	+	yaiB	b0382	0.66	+0.8
400,783	-	yaiB	b0382	0.66	+1.5
400,783	-	yaiB	b0382	0.66	+2.9
400,783	-	yaiB	b0382	0.66	+1.5
400,812	+	yaiB	b0382	0.77	+1.1
400,812	-	yaiB	b0382	0.77	+3.1
400,815	+	yaiB	b0382	0.79	+1.3
400,815	+	yaiB	b0382	0.79	+0.6
400,816	-	yaiB	b0382	0.79	+0.7
400,823	-	yaiB	b0382	0.82	+0.8
400,828	-	yaiB	b0382	0.84	+1.4
400,835	+	yaiB	b0382	0.86	+1.4
400,865	-				+3.1
400,898	-				+0.3
400,899	+				+0.2
400,901	-				+0.3
400,901	-				+2.8
400,915	+				+0.4
400,915	+				-0.0
400,982	-				+1.4
400,992	-				-1.3
400,998	-				+1.0
401,004	+				-1.3
401,006	-				+2.7
401,006	-				-1.2
401,015	-				-0.2
401,015	-				-0.1
401,020	-				-0.2
401,078	-				+0.2
401,086	-				+0.4
401,088	-				+0.2
401,088	-				-1.0
401,091	-				+0.5
401,091	-				-0.7
401,105	+				-1.6
401,113	-	phoA	b0383	0.10	+0.5
401,113	-	phoA	b0383	0.10	-0.6
401,113	-	phoA	b0383	0.10	-0.8
401,120	+	phoA	b0383	0.11	+0.7
401,123	+	phoA	b0383	0.11	-0.1
401,123	+	phoA	b0383	0.11	+1.0
401,125	+	phoA	b0383	0.11	-0.3
401,126	-	phoA	b0383	0.11	-0.1
401,133	-	phoA	b0383	0.11	-0.7
401,192	-	phoA	b0383	0.16	+0.4
401,199	-	phoA	b0383	0.16	-0.6
401,217	-	phoA	b0383	0.17	-0.1
401,271	-	phoA	b0383	0.21	+0.0
401,280	+	phoA	b0383	0.22	+1.2
401,282	+	phoA	b0383	0.22	+0.8
401,290	-	phoA	b0383	0.23	+0.4
401,332	-	phoA	b0383	0.25	-1.7
401,348	+	phoA	b0383	0.27	+0.2
401,348	+	phoA	b0383	0.27	+1.5
401,350	-	phoA	b0383	0.27	+0.2
401,350	-	phoA	b0383	0.27	-0.5
401,350	-	phoA	b0383	0.27	-0.1
401,363	+	phoA	b0383	0.28	-0.1
401,380	+	phoA	b0383	0.29	+0.2
401,486	+	phoA	b0383	0.36	+0.9
401,486	+	phoA	b0383	0.36	+1.5
401,494	-	phoA	b0383	0.37	-0.2
401,503	+	phoA	b0383	0.38	-0.5
401,616	+	phoA	b0383	0.46	+0.1
401,621	+	phoA	b0383	0.46	+1.0
401,653	-	phoA	b0383	0.48	+1.1
401,800	+	phoA	b0383	0.59	-0.4
401,800	+	phoA	b0383	0.59	+0.6
401,808	-	phoA	b0383	0.59	+0.4
401,808	-	phoA	b0383	0.59	-2.2
401,830	-	phoA	b0383	0.61	+1.2
401,839	+	phoA	b0383	0.61	+0.6