Strain Fitness in Escherichia coli BW25113 around b3777

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
3,957,060	-	ilvC	b3774	0.72	-4.5
3,957,136	+	ilvC	b3774	0.77	-4.2
3,957,142	-	ilvC	b3774	0.78	-4.6
3,957,178	-	ilvC	b3774	0.80	-3.9
3,957,225	+	ilvC	b3774	0.83	-3.0
3,957,241	+	ilvC	b3774	0.85	-2.4
3,957,264	+	ilvC	b3774	0.86	-4.6
3,957,264	+	ilvC	b3774	0.86	-4.9
3,957,269	-	ilvC	b3774	0.86	-4.8
3,957,272	+	ilvC	b3774	0.87	-2.1
3,957,272	-	ilvC	b3774	0.87	-3.9
3,957,312	+	ilvC	b3774	0.89	-4.4
3,957,319	+	ilvC	b3774	0.90	-3.0
3,957,319	+	ilvC	b3774	0.90	-3.8
3,957,365	+				-2.3
3,957,365	+				-4.0
3,957,400	+				-2.0
3,957,400	+				-4.8
3,957,420	-				-5.2
3,957,426	+				-0.0
3,957,439	+				+0.3
3,957,494	+				-0.5
3,957,498	+				-0.1
3,957,498	+				+0.0
3,957,500	+				+0.4
3,957,508	-				-0.2
3,957,559	-				-0.0
3,957,572	-				-0.2
3,957,572	-				-0.1
3,957,580	-				+0.3
3,957,581	+				+0.0
3,957,602	+	ppiC	b3775	0.17	-0.4
3,957,606	-	ppiC	b3775	0.18	+0.1
3,957,678	-	ppiC	b3775	0.44	-0.7
3,957,692	-	ppiC	b3775	0.49	+0.1
3,957,692	-	ppiC	b3775	0.49	-0.2
3,957,765	-	ppiC	b3775	0.74	+0.5
3,957,767	+	ppiC	b3775	0.75	+0.3
3,957,767	+	ppiC	b3775	0.75	-0.9
3,957,838	+				+0.1
3,957,838	+				-1.2
3,957,842	+				+0.4
3,957,842	+				-1.3
3,957,842	+				+0.2
3,957,916	-				+0.2
3,957,916	-				+0.2
3,957,922	+				+0.2
3,957,931	-				+0.2
3,957,966	-				+0.5
3,957,966	-				+0.3
3,957,999	-				-0.5
3,958,000	+				+0.2
3,958,006	-				-0.4
3,958,053	+				-0.0
3,958,053	+				+0.1
3,958,073	-				+0.1
3,958,080	+	yifN	b3777	0.10	-0.4
3,958,082	+	yifN	b3777	0.10	-0.1
3,958,088	-	yifN	b3777	0.12	+0.1
3,958,094	-	yifN	b3777	0.13	+0.5
3,958,106	-	yifN	b3777	0.16	-0.5
3,958,106	-	yifN	b3777	0.16	+0.7
3,958,111	+	yifN	b3777	0.17	-0.6
3,958,113	-	yifN	b3777	0.17	-0.2
3,958,113	-	yifN	b3777	0.17	+0.1
3,958,115	+	yifN	b3777	0.18	-2.7
3,958,126	+	yifN	b3777	0.20	+0.2
3,958,135	-	yifN	b3777	0.22	+0.3
3,958,135	-	yifN	b3777	0.22	-0.1
3,958,137	-	yifN	b3777	0.23	-0.5
3,958,141	+	yifN	b3777	0.24	-0.3
3,958,144	-	yifN	b3777	0.24	-0.1
3,958,154	-	yifN	b3777	0.27	-0.1
3,958,177	-	yifN	b3777	0.32	-0.6
3,958,185	-	yifN	b3777	0.33	-0.4
3,958,191	-	yifN	b3777	0.35	-0.4
3,958,191	-	yifN	b3777	0.35	-0.1
3,958,295	-	yifN	b3777	0.58	-0.4
3,958,307	-	yifN	b3777	0.61	+0.1
3,958,352	+	yifN	b3777	0.71	+0.4
3,958,391	-	yifN	b3777	0.79	-0.1
3,958,391	-	yifN	b3777	0.79	-1.0
3,958,393	-	yifN	b3777	0.80	+0.5
3,958,403	-	yifN	b3777	0.82	-0.7
3,958,403	-	yifN	b3777	0.82	+0.9
3,958,419	+	yifN	b3777	0.86	+0.2
3,958,435	-	yifN	b3777	0.89	-0.2
3,958,435	-	yifN	b3777	0.89	+0.5
3,958,459	+				-0.9
3,958,483	+				+0.4
3,958,529	+				+0.3
3,958,659	+				-0.7
3,958,659	+				+0.2
3,958,705	+				+0.0
3,958,904	-	rep	b3778	0.10	+0.9
3,958,904	-	rep	b3778	0.10	+0.0
3,958,931	+	rep	b3778	0.11	+0.5
3,958,942	+	rep	b3778	0.12	+0.8
3,958,950	-	rep	b3778	0.12	+0.3
3,958,961	+	rep	b3778	0.13	-0.8
3,958,966	+	rep	b3778	0.13	+0.3
3,958,970	-	rep	b3778	0.13	+2.9
3,958,974	-	rep	b3778	0.14	+0.3
3,959,079	-	rep	b3778	0.19	+0.4
3,959,079	-	rep	b3778	0.19	+0.5
3,959,093	-	rep	b3778	0.19	+1.0
3,959,113	-	rep	b3778	0.20	-0.1
3,959,195	+	rep	b3778	0.24	+0.9
3,959,207	-	rep	b3778	0.25	+0.5
3,959,207	-	rep	b3778	0.25	+1.1
3,959,214	-	rep	b3778	0.25	+1.2
3,959,215	-	rep	b3778	0.25	+1.3
3,959,221	-	rep	b3778	0.26	+1.1
3,959,222	-	rep	b3778	0.26	-0.6
3,959,222	-	rep	b3778	0.26	+1.9
3,959,229	+	rep	b3778	0.26	+0.6
3,959,281	-	rep	b3778	0.29	-0.1
3,959,351	+	rep	b3778	0.32	-0.1
3,959,351	+	rep	b3778	0.32	+0.6
3,959,352	-	rep	b3778	0.32	+0.6
3,959,352	-	rep	b3778	0.32	-0.4
3,959,361	-	rep	b3778	0.33	-0.3
3,959,361	-	rep	b3778	0.33	+0.9
3,959,371	-	rep	b3778	0.33	-0.2
3,959,375	+	rep	b3778	0.33	+0.1
3,959,376	-	rep	b3778	0.33	+0.4
3,959,409	+	rep	b3778	0.35	+0.3
3,959,414	-	rep	b3778	0.35	+0.3
3,959,419	+	rep	b3778	0.36	+0.3
3,959,454	+	rep	b3778	0.37	+0.8
3,959,454	+	rep	b3778	0.37	+0.6
3,959,460	-				-0.3
3,959,460	-	rep	b3778	0.38	+1.1